Protein Info for TX73_009505 in Rhodopseudomonas palustris CGA009

Annotation: DUF3325 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 95 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 37 to 62 (26 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details PF11804: DUF3325" amino acids 6 to 84 (79 residues), 57.9 bits, see alignment E=5e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA1849)

Predicted SEED Role

"FIG016502: iron uptake protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (95 amino acids)

>TX73_009505 DUF3325 domain-containing protein (Rhodopseudomonas palustris CGA009)
MSHALAQALCLLGFTAFAFAMRRPQNEILRRSLRRPVVLVLRAIGACLLAIALAVVVAVS
GWGFGLVKFSGHTTLAAALVYCALIGYGRRAGLRQ