Protein Info for TX73_009270 in Rhodopseudomonas palustris CGA009

Annotation: DNA polymerase Y family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00817: IMS" amino acids 44 to 168 (125 residues), 48.2 bits, see alignment E=1.1e-16 PF11799: IMS_C" amino acids 256 to 344 (89 residues), 21.1 bits, see alignment E=3.5e-08

Best Hits

KEGG orthology group: K14161, protein ImuB (inferred from 100% identity to rpa:RPA1802)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (533 amino acids)

>TX73_009270 DNA polymerase Y family protein (Rhodopseudomonas palustris CGA009)
MRAASVNRRRILGLWLPRLSTDRVERASPQASTGSPAEAAPPPPRVVAAKRDNALVVIAC
DARASRGGVIPGMPLATARAMHPALDVIDHDPHADAALLNAIADWCDRFTPLVAFDGSDG
LLLDITGCAHLFGDEAKLLNMLTAALTRQGFAVSAAIAGTAVAARALTRGGSGLIVAPGE
EMRAVAPLPVAALGVDEAIVRGLRRAGFKTVGEVLARQPTELAARFGEGFVAVLRQATGE
DDAPISPRRPAPDYVVDKNFAEPVATTEVILPTLLALARLLIAAMERNGKGARQLTASFF
RSDGAVRSISVETGQPVTRVEVVQRLFAEKLDALNDPLDPGFGFDLIRLAASVSVAVTEA
QRGFDTTAHQAEDVALLADTLAARLGARRVVRYLPQDTHIPERAALAVPVQHCPPDVGDA
PWPARADEPPLRPLRLLQQPEPIEVIAGAPDDPPAQFTWRRVHHRVARAEGPERIAMEWW
CAAEPGLTRDYFRIEDEAGARFWVYRDGLYNVEVTPEPDGNGQPRWYMHGLFA