Protein Info for TX73_008880 in Rhodopseudomonas palustris CGA009

Annotation: zinc-binding alcohol dehydrogenase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 PF08240: ADH_N" amino acids 43 to 86 (44 residues), 21.5 bits, see alignment 2.5e-08 PF00107: ADH_zinc_N" amino acids 168 to 278 (111 residues), 61.7 bits, see alignment E=1.1e-20 PF13602: ADH_zinc_N_2" amino acids 202 to 327 (126 residues), 44.4 bits, see alignment E=5.2e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA1726)

Predicted SEED Role

"Quinone oxidoreductase (EC 1.6.5.5)" in subsystem ZZ gjo need homes (EC 1.6.5.5)

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.5

Use Curated BLAST to search for 1.6.5.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>TX73_008880 zinc-binding alcohol dehydrogenase family protein (Rhodopseudomonas palustris CGA009)
MSDSSVAAAMSIEARCVRLQDKAADVAAITPVLERLPLSRRGPSEVLIEVKAAAVNPSDV
KAATGLMPYAVFPRTPGRDFAGRVIDGPAEWLGRDVFGSSGDLGIRRDGTHATHLVVEAD
ALVEKPGSVSWEEAAGIGVPFVTATEGLRRAALAAGETLVIMGINGKVGQAAAQIASWRG
ARVIGVVRKAEPYAGHATAPVEIIDSSSTDVAAKVRELTGGKGADVVFNTVGDPYFKAAN
QCLALRGRQILIAAVHRIVEFDILAFYRGQHTYVGIDTLAFSSIATGEVLRSLGDGFAGG
HLKPFPIVDGAIYPLGQAQAAYRAVAGSSRDRVIIKPD