Protein Info for TX73_008640 in Rhodopseudomonas palustris CGA009

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 863 transmembrane" amino acids 13 to 35 (23 residues), see Phobius details amino acids 290 to 315 (26 residues), see Phobius details PF02743: dCache_1" amino acids 41 to 225 (185 residues), 63.1 bits, see alignment E=7.1e-21 PF00512: HisKA" amino acids 331 to 396 (66 residues), 70.7 bits, see alignment 2.2e-23 PF02518: HATPase_c" amino acids 443 to 557 (115 residues), 97.2 bits, see alignment E=2.1e-31 PF00072: Response_reg" amino acids 590 to 702 (113 residues), 93 bits, see alignment E=3.5e-30 PF01627: Hpt" amino acids 769 to 832 (64 residues), 34.8 bits, see alignment 4e-12

Best Hits

KEGG orthology group: K00936, [EC: 2.7.3.-] (inferred from 100% identity to rpa:RPA1681)

Predicted SEED Role

"Sensor histidine kinase with PAS/PAC and response regulator receiver domains (EC 2.7.3.-)" (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (863 amino acids)

>TX73_008640 ATP-binding protein (Rhodopseudomonas palustris CGA009)
MLPPTRPNLKRSLVALRVTTIVLIATIVGTNLIFLGNLRESTLQTAETNLERYTLTLAEE
ADRSLKSMDLLLSSVRDYVSRAGVTDSESYRRLMSQQSVYSLLSEKITGMPQVDAVTMID
ETGKLINFSRYWPIPDVNISDRDYFRALSSDSTLSTFVSAPTRNRGSGTWNIYLAQRLND
TRGGFIGLLLGAISVQYFENFFAATSPGAGTEIALLRSDGTLLVNYPHSDKLGTVVTDAG
RLALAAGSRQREAGNSNKQIRVTRMLPNYPIVVRVTQPEDSALQNWQDMAVLMIAMSVIS
ALVIITGSVAIARWWGKQHLYAEAAEAASAAKSSFVAMMSHEIRTPMNAVIGLATNLLET
RLDAEQRQAVTSIHDAGDNLLQILDDILDFSKLEAGRLSLEPIPFAPRNIVDNTLSVIGP
RAIAKGLVIRLEARGDIPEALTGDAGRIRQVLLNLISNAVKFTTAGEIVITTECISRDTT
NARMRWIVTDTGIGIAADKIDSLFKDFVQADSSISRRFGGSGLGLAISKRLIEQMGGKIG
VSSAPGRGSEFHFSLTLPIADHAAPPEQDDQDVYAQFRARIEAAGRPLRILVVDDNPTNR
AIATQMLGEFRVQTNTACDGTEAVTAATRFGYDVVLMDVRMPEMDGLDATRAIRSHGGAL
ANVPIIAFTANAFAEDAAACRAAGMNDHVAKPVRKKALIEAILRALPPLPAAESPRIVPV
PAPLAPPPADNSDQTEVPSDVAGAGQIYVGRKAFGHLVEEIGEDATLAVLSVFARDTEAR
IALFDTLDIANERRRIEREAHSLKSAAATFGLDTLSGLARELEHAAPHLTQAEYVAMTRQ
IKAAFSAARRVPADDNQLVELAG