Protein Info for TX73_008130 in Rhodopseudomonas palustris CGA009

Annotation: TIGR01620 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 transmembrane" amino acids 90 to 110 (21 residues), see Phobius details amino acids 123 to 144 (22 residues), see Phobius details amino acids 249 to 268 (20 residues), see Phobius details amino acids 289 to 309 (21 residues), see Phobius details TIGR01620: TIGR01620 family protein" amino acids 95 to 363 (269 residues), 239.8 bits, see alignment E=1.9e-75 PF05128: DUF697" amino acids 208 to 366 (159 residues), 166.4 bits, see alignment E=2.4e-53

Best Hits

Swiss-Prot: 100% identical to Y1583_RHOPA: UPF0283 membrane protein RPA1583 (RPA1583) from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)

KEGG orthology group: K08990, putative membrane protein (inferred from 100% identity to rpt:Rpal_1771)

Predicted SEED Role

"FIG01006240: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (369 amino acids)

>TX73_008130 TIGR01620 family protein (Rhodopseudomonas palustris CGA009)
MTERVPPRRPATFKLSDPSVVLIDSDDGGGSYTAKPSAKADARPAASAAGAAPPPPPPRA
RVELAREAEPPISAPKAPKSVINPKKGFRWGTVFWSAATGLVSLAFWLWISKLVEDLFAQ
SQTLGTIGMVLALLAGGSLAIIIGREAFGLIRLARIEQLHARAARVLETDNSAEARAIIR
ELLKFEHPNPQLAHGRATLQKHIDDIIDGADLIRLAERELMAQLDLEAKVLISKAAQRVS
LVTAISPKALIDVLFVAIAATRLIGQLARLYGGRPGALGMFKLMRQTVSHLAITGGIALS
DSVMQSVLGHGLASRLSAKLGEGVVNGMLTARLGLAAMDLTRPLPFDALPRPQLGDLVKD
LMKKREKDE