Protein Info for TX73_007980 in Rhodopseudomonas palustris CGA009

Annotation: putative photosynthetic complex assembly protein PuhE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 34 to 55 (22 residues), see Phobius details amino acids 61 to 85 (25 residues), see Phobius details amino acids 107 to 132 (26 residues), see Phobius details amino acids 138 to 161 (24 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 215 to 241 (27 residues), see Phobius details PF12291: DUF3623" amino acids 1 to 251 (251 residues), 331 bits, see alignment E=2.3e-103 TIGR03055: putative photosynthetic complex assembly protein 2" amino acids 7 to 249 (243 residues), 381.9 bits, see alignment E=6e-119

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA1553)

Predicted SEED Role

"FIG01005659: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (354 amino acids)

>TX73_007980 putative photosynthetic complex assembly protein PuhE (Rhodopseudomonas palustris CGA009)
MVSYLGPPIFAAFVWWFSTGAVLLLVGSVGRSELLRAVCAGGMLTIALCGLSVTAHDVSV
GAAYMAFSCIIFLWGAQEIAFLSGWLTGPRAEPCPPGAKGFARFSYALQAIIYHEICLLA
CGGVVLVVTLGAENQVGLWTYVALWVLRQSAKINLFLGVPVTNDELMPDAVQFLKTYFAR
KPVSAFFPISVTMATAVLVVMIQRIVEVADTPFEVVGLTLVSTLFALGVVEHWFMLLPLP
AITLWSWGIRPGFSPENIVMEQKPSAPIAAASAQGSPAQLSEAPTAAEARPAAPQLVVVP
TARAEEAQPKARQLCARQRLEDQFRQTFLEQHPRSGLATARVAEPAATLNGRTS