Protein Info for TX73_007605 in Rhodopseudomonas palustris CGA009

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 PF00005: ABC_tran" amino acids 28 to 170 (143 residues), 127.3 bits, see alignment E=1.3e-40 PF08402: TOBE_2" amino acids 279 to 349 (71 residues), 51.6 bits, see alignment E=1.7e-17

Best Hits

Swiss-Prot: 45% identical to POTA_CLOTH: Spermidine/putrescine import ATP-binding protein PotA (potA) from Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)

KEGG orthology group: K02052, putative spermidine/putrescine transport system ATP-binding protein (inferred from 100% identity to rpa:RPA1479)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (353 amino acids)

>TX73_007605 ABC transporter ATP-binding protein (Rhodopseudomonas palustris CGA009)
MTADDGHGVAVQVAACGKTFADGTRALEPASLSIARGETLVLLGPSGCGKTTMLRIIAGL
ESPDAGGRVLFDGADVSAVPIEKRNVGMVFQSYALFPNMTVADNIGYGLKIRGVAKAERA
ARIAELVALTNIAGLEHRRIDQLSGGQRQRVALARAVAIRPAVLLLDEPLTALDAALRER
LRGELDRLLRSLGITTIYVTHDQAEAMALGDRIVVMSKGAIAQVGTPREIYFRPATRFVA
EFVGAANIIEAEIADGALRLPGGHWRIADSVSRSRAVAMIRPETIRIAATEAATLRGVVD
SVSFVGDRQRVVVSGATARPLAIDAPNALPIRGGDRVGLVADPEAIRLLPEHL