Protein Info for TX73_007280 in Rhodopseudomonas palustris CGA009

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 transmembrane" amino acids 9 to 28 (20 residues), see Phobius details amino acids 34 to 53 (20 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 116 to 138 (23 residues), see Phobius details amino acids 165 to 192 (28 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details amino acids 241 to 261 (21 residues), see Phobius details amino acids 265 to 285 (21 residues), see Phobius details amino acids 294 to 316 (23 residues), see Phobius details PF02653: BPD_transp_2" amino acids 34 to 304 (271 residues), 115.8 bits, see alignment E=1e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA1419)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (336 amino acids)

>TX73_007280 branched-chain amino acid ABC transporter permease (Rhodopseudomonas palustris CGA009)
MIGKGFYQTLASPWLWGILVLAACLPLALNSYHLHLLTLALVYVALASAWNIVGGMAGQV
SLAHSLFIGIGAMLSTALLVKFGINMWAGLVISAAIAGALGAMIAWIDFRFQLGHLSFVL
ITLAFAEMGAIIVEGWEFLGGASGLLLPRDTGDFWAFQFGGGRGAFWVMLGLAAAVVLVN
VAILNAPLGYYLRTIRDNEKAAQAIGVNVLRHKITAMTISAVLTSIVGTCYVRYLTFADP
YLLATPTITIEIVLFATVGGLGRAFGPALGALLLVPLGEVLRGQLGGAVPGLHYFIYGVV
VIVVILVTPRGLLPLAERAWRGLRRRGPEPRPASAS