Protein Info for TX73_007210 in Rhodopseudomonas palustris CGA009

Annotation: urea carboxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1182 PF00289: Biotin_carb_N" amino acids 1 to 110 (110 residues), 136.3 bits, see alignment E=2.1e-43 TIGR02712: urea carboxylase" amino acids 2 to 1179 (1178 residues), 1826.8 bits, see alignment E=0 PF02786: CPSase_L_D2" amino acids 116 to 319 (204 residues), 220.2 bits, see alignment E=8.3e-69 PF07478: Dala_Dala_lig_C" amino acids 145 to 291 (147 residues), 31.9 bits, see alignment E=3.4e-11 PF02785: Biotin_carb_C" amino acids 336 to 440 (105 residues), 115.7 bits, see alignment E=3.7e-37 TIGR00724: biotin-dependent carboxylase uncharacterized domain" amino acids 448 to 747 (300 residues), 270.9 bits, see alignment E=1.3e-84 PF02626: CT_A_B" amino acids 472 to 745 (274 residues), 311.3 bits, see alignment E=2.3e-96 PF02682: CT_C_D" amino acids 782 to 1002 (221 residues), 133.5 bits, see alignment E=2.8e-42 PF00364: Biotin_lipoyl" amino acids 1112 to 1178 (67 residues), 57.1 bits, see alignment 4.5e-19

Best Hits

Predicted SEED Role

"Urea carboxylase (EC 6.3.4.6)" in subsystem Urea decomposition (EC 6.3.4.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.4.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1182 amino acids)

>TX73_007210 urea carboxylase (Rhodopseudomonas palustris CGA009)
MFSKVLIANRGEIAGRIGRTLRRMGIASVAIYSDADRFTRPMREADEAVRVGGDAASDSY
LNVDAVIDACLLTGAQAVHPGYGFLSENRGFAERLKQHGIAFIGPRPEHLEAFGLKHRAR
ELAQGSNVPLLPGTGLIDSIDEALEAAARIGFPLMLKSTAGGGGIGMQLCHDEATLRERF
ATVQRTARASFGDARVYLERFVADARHIEVQIFGDGQGNVIALGERDCSLQRRNQKVVEE
TPAPGISDEMRARLHQAAVALGQSVAYESAGTVEFIYDVARDEFYFLEVNTRLQVEHPVT
EAVFGVDLVEWMVRQAAGDSPLATYTPRPPKGAAIEVRLYAENPGAGFRPSAGRLTRVDF
PDDVRVDGWIETGDEVTPFYDPMLAKLIVHAADRDAAIDQIIGALAATTVAGIETNLDYL
RAIASSALFHSGKVATKVLADFSFAARTIDVVAPGAQSGLQELPGRLHLWHVGVPPSGPM
DERSFRLANRIVGNPETTAAFELTVSGPTLRFNADAVVALCGAGMAAKLDGTAVSNDAPI
AVRAGQILAIGKIEGAGQRCYLAIRGGFDAPEVFGSRAVFTLGAFGGHATGALKAGDVLH
FGSIAPAAEPRALSDAERPALTRAWQIGVIYGPHGAPDFFRDEDIATLFASDYEVHFNSA
RTGVRLIGPKPQWARADGGEAGLHPSNIHDNAYAVGAIDFTGDMPIILGPDGPSLGGFVC
PAVVARDELWKVGQLKPGDKVRFVPVMRADDPVAGPTAIAAPAKLGSAIVGRHDDGEIPV
VYRRAGDDNLLVEYGPMELDIALRLRVHVLAEAVEKAKLAGLIDLTPGIRSLQIHYDSAV
MSRRKLLDALVRIERELPSVEAMAVPSRIIHLPLSWNDPQAVLAMRKYQELVRPDAPWCP
SNIEFIRRINGLDNDDDVKRIVFDANYLVLGLGDVYLGAPVATPVDPRHRLVTTKYNPAR
TWTPENAVGIGGAYMCIYGMEGPGGYQLFGRTIQVWNTWRTTEVFKPGHPWLLRFFDQIR
FFPVTPEELLDARAAFPHGGYPLKIEETTFSYADYKAFLAREAQGITAFKTRQQTAFEAE
RQRWRDAKLDEVGEDDTAAALGSGGDVPDGCVGQFTEAPGNVWKLTVEPGEHVEIGQTLA
VIESMKMEIAIPATARGIVRALNAKPGQTLRAGDLICALEEV