Protein Info for TX73_006405 in Rhodopseudomonas palustris CGA009

Annotation: YihY/virulence factor BrkB family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 transmembrane" amino acids 22 to 47 (26 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 135 to 161 (27 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 207 to 231 (25 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details TIGR00765: YihY family inner membrane protein" amino acids 15 to 271 (257 residues), 111.1 bits, see alignment E=4.3e-36 PF03631: Virul_fac_BrkB" amino acids 19 to 273 (255 residues), 216.7 bits, see alignment E=2.2e-68

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 95% identity to rpt:Rpal_1440)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (284 amino acids)

>TX73_006405 YihY/virulence factor BrkB family protein (Rhodopseudomonas palustris CGA009)
MLGAEWKPIAVGTYERIGDDRLFLVAAGVVFYWLLALFPAITALVSSYALFADAATIGDH
LAQLSSIVPAGTYSVVEEQVGRVLANGQTKLGFAFLISLSLALWSANGGVKAIIDALNAV
YDVEEQRGFFKLNGFSLLLTLGALGAVLAAIGLVIAAPIVLARIGLGNLVAVAIDYGRWP
VLALMTFGGLSLLYRTAPNRPSPPWRWVAPGSIVATLSWLAGSAALSYYLANFADYNATY
GSLGAAIGLMIWMWMTAIVVLAGGEVNAEIEARAGRLGFTETSS