Protein Info for TX73_005825 in Rhodopseudomonas palustris CGA009

Annotation: TorF family putative porin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF09694: Gcw_chp" amino acids 40 to 134 (95 residues), 58.1 bits, see alignment E=7e-20 TIGR02001: conserved hypothetical protein" amino acids 41 to 133 (93 residues), 50 bits, see alignment E=1.5e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA1134)

Predicted SEED Role

"FIG00441001: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (323 amino acids)

>TX73_005825 TorF family putative porin (Rhodopseudomonas palustris CGA009)
MKKTILSVAALLAVGVGSASAADLPAKVYTKAPPIVAFDPWDIAFGAAVMSDYVFRGVTQ
SNHKPSVTAYFEPRYNVTKDLQLYVGTSFESISFANRAAAEVDIYGGIRPTFGAFAFDFG
VWGYLYPGGSCVDTAASGLGTLCAGDTNAISLVNGNVMKKDVSFYEGYAKVLWTINDSFA
LGGNEWYSPNFLNTGAWGNYASVTGKYTAPTTLFGASGVGMYVSGEYGRQWFGTTDAFYG
NIKLADYNTWNVGVGFTYKVFTLDLRYSDTDLSQASCNAFTSDFTATANGSFSSINQTGV
GSKWCGSTFIAKLSADVTLGALK