Protein Info for TX73_005680 in Rhodopseudomonas palustris CGA009

Annotation: OpgC domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 59 to 75 (17 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 209 to 227 (19 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details amino acids 323 to 342 (20 residues), see Phobius details amino acids 348 to 369 (22 residues), see Phobius details PF10129: OpgC_C" amino acids 18 to 373 (356 residues), 456.3 bits, see alignment E=3.5e-141

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_1295)

Predicted SEED Role

"OpgC protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>TX73_005680 OpgC domain-containing protein (Rhodopseudomonas palustris CGA009)
MTGGVQSREVPLMGQGERDLRLDFLRGVGQWMIFVDHIPYNFLNWFTLRNYGFCDAAEFF
VYISGYSIGFAYGPAVRAGEMVAATKRLWTRAAQLYVAHIFLFLFFTAQISRAARRFDNP
MYKDEFNVAQFLENPDVMIQQALLLKYKPVNLDVLPLYIVLVVAAPLILWGLLRRPTLTL
VCSGLLYLVSRHFGWNLPSFPDGHWYFNPFAWQFLFVFGIWCGFGNGPQIRPWVKSLPNQ
ILSWTIVVVALVIALSWNFEALYGLVPESIGKILYPIDKTSLAPVRLIHFLALLAIVVKL
LPPDLPALRSEHLRPIILCGQRSLPVFCFGVILAFTAHWILVQVSGSIAMQILVSVGGIG
LMTGVAWLATWYRTLPTLVTVPATVPVDHGDEVPAEAEKASIAEPSAPERVPTERA