Protein Info for TX73_005395 in Rhodopseudomonas palustris CGA009

Annotation: DUF3096 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 51 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 29 to 49 (21 residues), see Phobius details PF11295: DUF3096" amino acids 10 to 45 (36 residues), 64.8 bits, see alignment E=2.2e-22

Best Hits

KEGG orthology group: None (inferred from 96% identity to rpx:Rpdx1_1215)

Predicted SEED Role

"FIG01004233: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (51 amino acids)

>TX73_005395 DUF3096 domain-containing protein (Rhodopseudomonas palustris CGA009)
MTITTAHIPAIVALLAGILILVMPRLLNFIVAIYLICIGLIGLGALRFLHL