Protein Info for TX73_004635 in Rhodopseudomonas palustris CGA009

Annotation: LysE family translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 41 to 68 (28 residues), see Phobius details amino acids 70 to 93 (24 residues), see Phobius details amino acids 123 to 142 (20 residues), see Phobius details amino acids 148 to 174 (27 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details PF01810: LysE" amino acids 16 to 207 (192 residues), 129.9 bits, see alignment E=4.2e-42

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA0900)

Predicted SEED Role

"L-lysine permease" in subsystem Lysine degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (210 amino acids)

>TX73_004635 LysE family translocator (Rhodopseudomonas palustris CGA009)
MLGIHDFWLFVASGLLLNVTPGPDTAFIVGRGLQFGWRGGAAAALGVGTGCLVHVAAAAV
GLSALLMASTLAFSVLKWVGAAYLIWLGARMLLSKPSDFTANAGAAPTLSIPAVFRQGML
TNVLNPKVALFFLAFLPQFVAADAPNKALAFLVLGLIFVVNGTLYCLALAAFAARAADRL
RRSGTVLQWINRGLGALFVALGIRVALART