Protein Info for TX73_004540 in Rhodopseudomonas palustris CGA009

Annotation: Na+-dependent transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 77 to 102 (26 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 138 to 162 (25 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 212 to 231 (20 residues), see Phobius details amino acids 237 to 259 (23 residues), see Phobius details amino acids 280 to 300 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_0949)

Predicted SEED Role

"FIG01004413: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>TX73_004540 Na+-dependent transporter (Rhodopseudomonas palustris CGA009)
MTIGLLRGAALPVKGLAWLGRQGTRAIAALVILGLLVPPLGDILRPFVTEAIFALLCISF
MRVDVAQVRANLRQPGTVLAATAWTTLAVPALAGLGCLAVGLDVRSPDLFLALMLQAVAS
PMMASPALAALMGLDATLVLITLVTSTALIPFTAPLFAYLFVVSALTLSPLALGLKLSAI
LGGSLLVAAIIRKLVGADAIRRHKEPIDGINILILYVFVAAVMGNVVSSFIARPLLMIAL
TLFAFAVFLVLLVATMLLFRKIGAGRALALGLMVSQRNMGLMLAATDGVLPGATWLYFAL
SQFPIYLAPQLLKPIARRVLARPSFDAAGEPVSSPANR