Protein Info for TX73_004195 in Rhodopseudomonas palustris CGA009

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1113 transmembrane" amino acids 763 to 782 (20 residues), see Phobius details PF08238: Sel1" amino acids 909 to 943 (35 residues), 33.2 bits, see alignment (E = 2.7e-12) amino acids 946 to 980 (35 residues), 24.4 bits, see alignment (E = 1.7e-09) amino acids 981 to 1015 (35 residues), 23.3 bits, see alignment (E = 3.9e-09) amino acids 1017 to 1052 (36 residues), 34.2 bits, see alignment (E = 1.3e-12)

Best Hits

KEGG orthology group: K13582, localization factor PodJL (inferred from 100% identity to rpa:RPA0814)

Predicted SEED Role

"TPR repeat, SEL1 subfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1113 amino acids)

>TX73_004195 hypothetical protein (Rhodopseudomonas palustris CGA009)
MNRVSWSVEEIEPSVREKAEAAAKRAGLSLTDWINAQLGEAAPQQPATEQLRMPGRPAMP
ERSATEVAEIHQRLDAIARQIDHISRAPARSEPPVARQLNDAISRLDARLARITEPKPAA
ARPAEAAAVPPQTPTDRVERAAAQVYPSPTLDPNALDKAIAEIAARQSELDASIGRMPRQ
PASFAPPIAPAMAPPPPQAGPDFTSLEKQLHKITSQIDALQRSDKVEQSIAAFRADLAEI
RQTITEAMPRKAIETLEGEIRSLAQRLDESRANGSNSEVIVGIERALGEIHAALRSLTPA
EQLAGFDEAIRNLGGKIDMIVRNSDDPGTVQQLENAIGALRGIVSNVASNEALGQLSANV
HALGEKIEQLAQADNHSISFAALEQRISALTAALESRERPAPSESTEQLESAVRTLSERI
DHLPIGNDNQSAFAHLEQRVAHLLERMEAATEQRDGSANLGRVEEGLHDILRMLERQQSQ
FDVLADIDRRPAPALDPSFVDTIKRELSDMRFSQSETDRHTQDSLEAVHNTLGHVVDRLA
MIEGDLRTARATPPLAPPPAPAPAPEQAKPAFLAAAPIAPAPAAPVAAPVPPQPQPEMAN
PAAEPFAAAPREFAAAKPAVEPPAPAPEPRGPRAFHDIHESAAGPRQPQKIEPVVAVPQP
ARREATLPPDHPLEPGTKPPARVASPSERIAASESALGEIAPAQPEPANATSFIAAARRA
AQAAASASSSAGKAKPGKPKTDGDKPDPDGGTPGSPLGSKIKSLLVGASVVVIVLSSFQM
AMKLFDSGEAPPVASVTAPKLSPAPDKQRLPADERQSDPTEPTAPPSVAPVAPPPSMISP
TPVERQSLYTPPAPPQTEPAAPSDITGTIPSQPSAAPEKFGTVAIPSAERLPDTIGGATL
RTLALKGDAAAAYEVATRYAEGKGVPVNYDEAAKWYQRAADAGVTPAIFRIGTLYEKGLG
VKRDLDVARTLYSTAADRGNAKAMHNLAVLYADGGSKGANYKTAAAWFRKAAERGVADSQ
FNLGILYARGIGVDQNLAESYKWFSLAAAQGDEDAGRKREDVAKRLDPQSLAAAKLAIQT
FTAEPQPDAAVKVAAPAGGWDGQPAAAAKRAAR