Protein Info for TX73_004010 in Rhodopseudomonas palustris CGA009

Annotation: EAL domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 879 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 291 to 314 (24 residues), see Phobius details PF12860: PAS_7" amino acids 336 to 446 (111 residues), 101.3 bits, see alignment E=5.6e-33 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 452 to 611 (160 residues), 144.5 bits, see alignment E=1.3e-46 PF00990: GGDEF" amino acids 453 to 608 (156 residues), 171.3 bits, see alignment E=2.2e-54 PF00563: EAL" amino acids 630 to 859 (230 residues), 256.6 bits, see alignment E=3e-80

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_0845)

Predicted SEED Role

"FIG01007324: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (879 amino acids)

>TX73_004010 EAL domain-containing protein (Rhodopseudomonas palustris CGA009)
MLRLRPILWLILSGALLIAGIAVTTTLTVSNFKEKALRNGERELSNTALLLALHYDREID
DFLAMQNDIVTTARQMQQPSAEAFGGTMATLAMHQTLRSRARGANEITALKIFDAGGTLI
NTSDVWPVPVLSIADQRYFLDHKSGMAQRVTVALEQNALAGGWSIVLAQRLTAADGEFLG
VVTRAITPAHFDRFLSQVSLVGESAVSMHHSDGTLLTRHPYAEGMIGRNFRDGPLQQQAM
FDDDTTARLTSPIDGQDRLVASHALTELPIVMVVTTTTEDALASWRTQTKLMVSVAAVSA
LVVTVILLLIIHQIGKHHRATQRKLQLDKQRLDTAINNMSQGLLLFDAQARLVICNQRYM
EMYGLSPDVVKPGCSLRDVLEHRKSTGSLGGNVDKITTDLIDRLSSQRVSEIHSIHDRSI
EFSSVPVPGGGWVITHEDATERKRYDERISYLAHFDSLTDLPNRTMFRQRLENELQRASR
GAPFALLYIDIDEFKSINDTLGHPVGDELLKQVAVRLRDCVRETDFVARLGGDEFAIIQI
GVSGADEATALVDRIYESIRLPYQCLGHQLSTDASIGIAIAPRDGADLDQLVKNADLAMY
SAKAEGRRTFRFFEPEMDAVAKTRRQLEFDLRQAIGDRGFEVHYQPQVDLSSGAITGCEA
LLRWRHPTRGMISPAEFIPIAEDTGLINEIGAWTLATACSEAATWDADITLAVNISPVQF
RQPSLALLVASVLGAAGLPAERLELEVTEAVLIHDDDAALSTLTQLRALGVRISLDDFGT
GYSSLSYLQRFPFDKIKIDRSFIDGIDTTEGSTAIVQAVVNIAAARRMTTTAEGVETARQ
REILSTLGCTQMQGWLFSPAVPAAAFRKLLTSHLSTCAA