Protein Info for TX73_003530 in Rhodopseudomonas palustris CGA009

Annotation: ribosome-associated ATPase/putative transporter RbbA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 904 transmembrane" amino acids 553 to 575 (23 residues), see Phobius details amino acids 707 to 732 (26 residues), see Phobius details amino acids 761 to 782 (22 residues), see Phobius details amino acids 788 to 810 (23 residues), see Phobius details amino acids 817 to 840 (24 residues), see Phobius details amino acids 876 to 899 (24 residues), see Phobius details PF00005: ABC_tran" amino acids 21 to 169 (149 residues), 108.2 bits, see alignment E=1.6e-34 amino acids 286 to 429 (144 residues), 113.5 bits, see alignment E=3.9e-36 PF13304: AAA_21" amino acids 136 to 192 (57 residues), 28.6 bits, see alignment 4.2e-10 amino acids 398 to 459 (62 residues), 31.6 bits, see alignment 5.1e-11 PF12679: ABC2_membrane_2" amino acids 538 to 835 (298 residues), 28.7 bits, see alignment E=2.5e-10 PF12698: ABC2_membrane_3" amino acids 557 to 897 (341 residues), 173.6 bits, see alignment E=1.9e-54 PF01061: ABC2_membrane" amino acids 710 to 866 (157 residues), 42.4 bits, see alignment E=1.8e-14

Best Hits

KEGG orthology group: K13926, ribosome-dependent ATPase (inferred from 100% identity to rpa:RPA0682)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (904 amino acids)

>TX73_003530 ribosome-associated ATPase/putative transporter RbbA (Rhodopseudomonas palustris CGA009)
MTGFAARLTHVTHTYGATHALDDVTLELPAGKMVGLIGPDGVGKSTLLALIAGVRRIQSG
EVLALDGDMRDARHRAQSAARIAYMPQGLGRNLYPTLSVFENLDFFGRLFGQGAAERNAR
IADLLRATGLSPFGDRPAGKLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLSRRQFW
ELIDRIRKRRPQMSVLVATAYMEEAERFDWLAALNDGKVIGAGTPAELRAQTKQPTLDAA
FIALLPAEMRANYADVVLPPLPNSGDGYAIEAENLTCRFGDFTAVDHVNFQIKRGEIFGF
LGSNGCGKSTTMKMLTGLLTPTEGEARLFGEVLDASDMATRKRVGYMSQSFSLYSELTVR
QNLLLHAQLFELPSAQIPDRVAEMLTRFDLADAADSRPDSLPLGMRQRLQLAVAVIHRPE
VLILDEPTSGVDPVARDSFWRMLIALSREDGVTIFISTHFMNEAERCDRISLMHAGKVLA
VGAPHELVERRGAADLEQTFIAYLEEATGAQRDGEETSFAAPREADTRQRWFDPARLWAY
ARRETMEILRDRLRLAFAILGPLVLMLTFGFGISFDVENLTYAVYDQDNTLESRELLESF
SGSRYFQQAPDIKSAAEIDRRLASGELKLVIEVPHGFGRDLLTNKSPEVAVWIDGAMPFR
AETIRSYVTGLSQAYLAEQYRRHAMASPTAPINIETRFRYNQAFKSVYSIIPGVITLILM
LIPAMLTAVGVVREKEVGSITNFRSTPVTATEFLLGKQIPYALLSFFSFLLLLLGAIVIF
GVPVRGSVIALVGGALLYVFSTTALGVLFSSFLSTQIAAIFIVAIISIIPAVNFSGLLVP
VSSLSQVGRLFGEAFPAAWFQEVSIGAFTKGMGFWMLAPNLLILFGFGLVYLIGAILALR
KQEA