Protein Info for TX73_003515 in Rhodopseudomonas palustris CGA009

Annotation: YgiQ family radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 PF08497: Radical_SAM_N" amino acids 27 to 342 (316 residues), 465 bits, see alignment E=1.6e-143 TIGR03904: uncharacterized radical SAM protein YgiQ" amino acids 27 to 608 (582 residues), 870.3 bits, see alignment E=2.8e-266 PF04055: Radical_SAM" amino acids 344 to 548 (205 residues), 45.9 bits, see alignment E=1.1e-15 PF11842: DUF3362" amino acids 557 to 655 (99 residues), 147.8 bits, see alignment E=4.6e-47

Best Hits

Swiss-Prot: 100% identical to Y679_RHOPA: UPF0313 protein RPA0679 (RPA0679) from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)

KEGG orthology group: None (inferred from 100% identity to rpa:RPA0679)

Predicted SEED Role

"UPF0313 protein RPA0679"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (677 amino acids)

>TX73_003515 YgiQ family radical SAM protein (Rhodopseudomonas palustris CGA009)
MQTSTEVVPPLMSRFRPSAAPRKPAPFLPMSRAEMDKLGWDACDIVLVTGDAYVDHPSFG
MAIIGRLLESQGFRVGIISQPDWQSAEPFKALGKPRVFFGVTGGNMDSMVNRYTADRRLR
HDDAYTPNGEGGKRPDRCTLVYAQRCREAFKDVPIILGGIEASLRRIAHYDYWSDKVRRS
VLADAKADLLLYGNAERAVIEVAHRLAAGEAPRELEDIRGVALFRRVPENTIELHADDLD
AADEGARQVRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWL
NPPPIPLTTEEMDSVYDLPYARAPHPSYGNAKIPAWDMIKTSVTIMRGCFGGCTFCSITE
HEGRIIQSRSEASILQEIEKIRDKTPGFTGVISDIGGPTANMYRMACKDSNIESSCRKPS
CVFPDICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPAYIKELVSHHVG
GYLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFEAAAKQAGKQYYLIPYFIAAHPGTTDE
DMMNLALWLKRNRYRADQVQTFLPSPMATATAMYHSGVNPLRGVRHGASEPVEAIKGLRQ
RRLHKAFLRYHDPDNWPVLREALKAMGRADLIGSRPDQLVPAHQPPGTGKAAGTRRPVRG
DGPKPQRFTTKGVRLVK