Protein Info for TX73_003450 in Rhodopseudomonas palustris CGA009

Annotation: branched-chain amino acid ABC transporter ATP-binding protein/permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 595 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 38 to 76 (39 residues), see Phobius details amino acids 83 to 107 (25 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 166 to 185 (20 residues), see Phobius details amino acids 214 to 239 (26 residues), see Phobius details amino acids 251 to 275 (25 residues), see Phobius details amino acids 295 to 318 (24 residues), see Phobius details PF02653: BPD_transp_2" amino acids 32 to 305 (274 residues), 129.7 bits, see alignment E=1.7e-41 PF00005: ABC_tran" amino acids 363 to 517 (155 residues), 97.5 bits, see alignment E=1.7e-31 PF12399: BCA_ABC_TP_C" amino acids 566 to 589 (24 residues), 35.3 bits, see alignment (E = 1e-12)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to rpa:RPA0666)

Predicted SEED Role

"Benzoate transport, ATPase component / Benzoate transport, inner membrane transport component" in subsystem Benzoate transport and degradation cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (595 amino acids)

>TX73_003450 branched-chain amino acid ABC transporter ATP-binding protein/permease (Rhodopseudomonas palustris CGA009)
MLTRPNLVVVLFFTLLLGCLLALPFVAGPYPVKLMTRIVIIATFVLSLDLLIGVTGLVSF
GHAAFFGCGAYAVYFVSPEAEAANVIVALGAGLLAGGLAALVVGAFATLTRGFYFIMVTL
AAGQMLFALFHDTDIAKGSDGAYINVKPELTLAGLTLLDFSDRRQFYYVCVVVLIAAYGL
LLALVRSPFGRVLQGIRANEVRMSSLGYDTYRYKLAAFTIAGMVAGLAGALFASIDGFVT
PDLLNWHQSGLAIMMVVLGGAGTLFGPILGALAYSSLEELLKTASIVGSFVADHWRLGTG
ATLIAAVLMSPDGLAGLLNWRRKQPQATPARPPADEPQRPAKTAKALATNHLSKNFNGIA
AVSDVTVTFEPNKVHAIIGPNGAGKTTFTNLLSGALPASAGSVQIDELDVTGWPAYRIAR
AGLGRSYQRTNIFPRFTVRENCALAAQLDKGALWRLRDAPYRTREQAAVDRALRVAGLAD
RGDTIAGRMSNGEQRQLEIAMLIASGADLLILDEPLAGMGPEETQRVVALLRDLVRDHTV
IVIEHDMDAVFAAADTLTVLVQGKLFARGRPDEIRRNEAVLEAYLGHHAKMKESA