Protein Info for TX73_003020 in Rhodopseudomonas palustris CGA009

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 913 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 323 to 344 (22 residues), see Phobius details PF00512: HisKA" amino acids 539 to 601 (63 residues), 31.6 bits, see alignment 2.2e-11 PF02518: HATPase_c" amino acids 645 to 765 (121 residues), 72 bits, see alignment E=8.1e-24 PF00072: Response_reg" amino acids 789 to 900 (112 residues), 57.8 bits, see alignment E=1.8e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA0583)

Predicted SEED Role

"Two-component hybrid sensor and regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (913 amino acids)

>TX73_003020 ATP-binding protein (Rhodopseudomonas palustris CGA009)
MRLSVRLTLAMTALVACTVAAIGVLAYYNIGRAVVPSGLTRLAYQAKARLGAYESVLRII
RNEVLSARLLPAHLGIARAQRGSGFDPEVGLSDEQWRKHLAAAYAGNMRVKPGILAYRLI
GVADDGRTLIAVDRHGPNGSVRTVPDAELTRLGGDEAFRRALELTGDEVFFSPIRIFSDA
NNAGTVPSSPRFTVAAPVRDEEGTVFAVLMVTLDLRPIFERIRDVLDNDTDVYFVEADGS
YMMTYIDGRILPAEPERRWQDDFPQLAATLGDKPGTAAVFSRPDGERVAAAIVMATLSSG
VRTAVIETEPLERIMAPATALRTSGLIVGLAAILGAVLLSALLSRSLAKPIAQLTRAVIA
FSRTGRLVVPVGLHGESRILADAFDETVAKIDAANAALRGKSELLDKTIASMADAVAVLD
ADGKRVFANPTCVTLFGVAEDIGSERWKLKYKRFLADGVTPMPDYDSPAARARRGESFDN
VELGIRHGDDPVVQLAASARRIENPDGSFAGAVIVYRNLTAFKESERQLRQAQKMQAIGQ
LTGGVAHDLNNILTVITGGIEILADGVSDRPGLKDVAAMVDQAVTRASDLTHGLLSFSRK
QPLQPRSIDVNALMLDTVKLLRPTLGAGIEIDVEPAPDLRPALADPSQLGSALINLAINA
RDAMKGNGKLLLETGNVDLDQAYAAQHDEVSAGRYVMLAVSDTGCGIPASIRDRMFEPFF
TTKAVGEGTGLGLSMVYGFVKQSGGHIELYSEEGHGTTIRLYLPYAAANLDVGPDSAAPP
LAQGGRESILVVEDDALVRSYVMTHLKALGYTAHSAASAAEAMSMVYDDVEFDLLFTDVM
LSGGMNGPQLADELRKYKPNLKVLFTSGYTENAMLHHGRLDPAVMLLPKPYRRADLARML
RRVLDAEADVPAK