Protein Info for TX73_002280 in Rhodopseudomonas palustris CGA009

Annotation: ribosome maturation factor RimP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 PF02576: RimP_N" amino acids 33 to 104 (72 residues), 81.6 bits, see alignment E=4.4e-27 PF17384: DUF150_C" amino acids 107 to 177 (71 residues), 50.1 bits, see alignment E=2.7e-17

Best Hits

Swiss-Prot: 100% identical to RIMP_RHOPA: Ribosome maturation factor RimP (rimP) from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)

KEGG orthology group: K09748, ribosome maturation factor RimP (inferred from 99% identity to rpt:Rpal_0443)

Predicted SEED Role

"FIG000325: clustered with transcription termination protein NusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (259 amino acids)

>TX73_002280 ribosome maturation factor RimP (Rhodopseudomonas palustris CGA009)
MTEPTPAVPETDDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIM
AERPDGTMLIDDCEAVSRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHL
VKIEMAVPHQGRKRYRGLLDGVEGDAVRVQREGATKDEDPLVLLPMHDIGDARLVLTDEL
IAESMRRGKQAERDLKQSLGLAPEPPPHAKRSDPKKSHAPKRGPKAAKAPTKPKPQNTKQ
HRLAADKSRRGEIDTSEGD