Protein Info for TX73_002250 in Rhodopseudomonas palustris CGA009

Annotation: 30S ribosomal protein S15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 89 TIGR00952: ribosomal protein uS15" amino acids 5 to 89 (85 residues), 113.7 bits, see alignment E=1.9e-37 PF00312: Ribosomal_S15" amino acids 8 to 88 (81 residues), 113.3 bits, see alignment E=2.4e-37

Best Hits

Swiss-Prot: 100% identical to RS15_RHOPA: 30S ribosomal protein S15 (rpsO) from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)

KEGG orthology group: K02956, small subunit ribosomal protein S15 (inferred from 100% identity to rpa:RPA0433)

MetaCyc: 53% identical to 30S ribosomal subunit protein S15 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S15p (S13e)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (89 amino acids)

>TX73_002250 30S ribosomal protein S15 (Rhodopseudomonas palustris CGA009)
MSITAERKAEVIKTSATKAGDTGSPEVQVAILSERITNLTAHFKTHTKDNHSRRGLLKLV
STRRSLLDYIKKKDEARYKALLEKHNIRR