Protein Info for TX73_002085 in Rhodopseudomonas palustris CGA009

Annotation: NAD(P)/FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 711 signal peptide" amino acids 1 to 14 (14 residues), see Phobius details amino acids 23 to 27 (5 residues), see Phobius details transmembrane" amino acids 15 to 22 (8 residues), see Phobius details amino acids 28 to 40 (13 residues), see Phobius details amino acids 51 to 74 (24 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 149 to 173 (25 residues), see Phobius details PF01946: Thi4" amino acids 197 to 234 (38 residues), 28 bits, see alignment 3.8e-10 PF00890: FAD_binding_2" amino acids 199 to 234 (36 residues), 27.8 bits, see alignment (E = 4.6e-10) PF13450: NAD_binding_8" amino acids 202 to 277 (76 residues), 50.3 bits, see alignment E=7.2e-17 PF01593: Amino_oxidase" amino acids 207 to 685 (479 residues), 88.4 bits, see alignment E=1.9e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA0401)

Predicted SEED Role

"Carotenoid cis-trans isomerase (EC 5.2.-.-)" in subsystem Carotenoids (EC 5.2.-.-)

Isozymes

Compare fitness of predicted isozymes for: 5.2.-.-

Use Curated BLAST to search for 5.2.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (711 amino acids)

>TX73_002085 NAD(P)/FAD-dependent oxidoreductase (Rhodopseudomonas palustris CGA009)
MKTFLTVKLVLVPFAVFWALLALHQPSWAIWLGLGLSLAGNAWRAYRRELFVLEAGGLAL
FAALAALSLIAPAVAACNALWLSFAGLAGISALSLAARRPWTSDYSRAAHPDNADTPQFF
LVNAAITALWAVLFGAIAACRYVDAPSEVITAIVSVGALISIFGPKAAIHLILNRMAASR
ESYRWPTPSFAPFEGQDCDVVVIGSGIGGLTAAALLADAGLKVKVFEQHVVAGGYCHTYL
RKAHHRGRPVLYRFDAGPHDFSGVQPGGPFATLLQRLGVGNRITWDRVTHSFHTQAGAID
VPPDWRDYVRLLGERFPASTAGIKELFDEIKAIFDDMFATAAGRGGVPGMPSSTDELLAF
PRNHPHAYRWMNRPFADLVASYVQDPAAVAFINGLAGYIGDGSEPPTCARMVPIFGYYFH
GGYYPRGGSGVVSDALVAAIEARGGEVKLKTPVARILVENDTAAGVVLGNGATVRARAVI
SNADLKRTLLDLVPSEALPQDARRWITEAAPANSCFSVHLGLDCVPDIRPSVHLHAPMRV
GLAMMSKLDPTAAPAGHSILSLIHLVPHAEAKSWFPPEPEHDWKSWRRSEAYLRRKQELG
DRMIAAAETVIPNLSQHIVYRTDASPVTYARYDWASFGSIYGMSHAGQLKGSKSPLRNLV
IVGGGNIGAGIEAVVISGAEAAEALMPGLLASARPVASEPAAATSPELMPA