Protein Info for TX73_001610 in Rhodopseudomonas palustris CGA009

Annotation: DUF2628 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 173 transmembrane" amino acids 26 to 45 (20 residues), see Phobius details amino acids 52 to 71 (20 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details PF10947: DUF2628" amino acids 14 to 101 (88 residues), 104.2 bits, see alignment E=1.9e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA0310)

Predicted SEED Role

"FIG01004240: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (173 amino acids)

>TX73_001610 DUF2628 domain-containing protein (Rhodopseudomonas palustris CGA009)
MPVFTVHAPRADDDEPQRAAPEQFRFVRDGFYVWAFVFGPFWLLYRRLWLATLGYLVVIA
ASAVALTALHSGSGTRFVVALLLASLLGLEAGSLWRWTLARRGWQSVGVAVGEDREIAER
RFFDRWVAGQPQPISFTLPVDRGAPPPARTIPLPASSIHGDIFGSFPNPGGSR