Protein Info for TX73_001260 in Rhodopseudomonas palustris CGA009

Annotation: ribosome maturation factor RimM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 176 TIGR02273: 16S rRNA processing protein RimM" amino acids 6 to 165 (160 residues), 155.1 bits, see alignment E=5.7e-50 PF01782: RimM" amino acids 7 to 86 (80 residues), 73.1 bits, see alignment E=1.8e-24 PF05239: PRC" amino acids 94 to 165 (72 residues), 38.3 bits, see alignment E=1.1e-13

Best Hits

Swiss-Prot: 100% identical to RIMM_RHOPA: Ribosome maturation factor RimM (rimM) from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)

KEGG orthology group: K02860, 16S rRNA processing protein RimM (inferred from 100% identity to rpa:RPA0243)

Predicted SEED Role

"16S rRNA processing protein RimM" in subsystem Ribosome biogenesis bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (176 amino acids)

>TX73_001260 ribosome maturation factor RimM (Rhodopseudomonas palustris CGA009)
MPSGLICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGARQFEIASAREAKSHL
VVTLKGVTTRDEAERLNGVELYVARDKLPPTEADEYYHADLIGLAAVTTTGDPLGKVVAI
HNFGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAVGQVVIEPPNEIEGDTPNHPEA