Protein Info for TX73_001195 in Rhodopseudomonas palustris CGA009

Annotation: TIGR00645 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 transmembrane" amino acids 34 to 57 (24 residues), see Phobius details amino acids 69 to 93 (25 residues), see Phobius details amino acids 125 to 142 (18 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 19 to 181 (163 residues), 175.8 bits, see alignment E=4.4e-56 PF03350: UPF0114" amino acids 25 to 141 (117 residues), 132.7 bits, see alignment E=4e-43

Best Hits

Swiss-Prot: 45% identical to Y3411_ENT38: UPF0114 protein Ent638_3411 (Ent638_3411) from Enterobacter sp. (strain 638)

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_0230)

Predicted SEED Role

"Uncharacterized protein family UPF0114"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (184 amino acids)

>TX73_001195 TIGR00645 family protein (Rhodopseudomonas palustris CGA009)
MTDQPDPTPSPSSAKRVERGFETLLFNSRWLMAPFYFGLVISLVVLLYKFVMLLYEFIVH
ATLAKESDIILGVLSLIDVSLTGNLVLIVVFSGYENFVSRIDPGNHPDWPEWMTKVDFAG
LKQKLLASIVAISAIQVLKAFMNIDSYDQTKLAWLVGIHLVFVVSTLIMALSDRWGHSDD
KGGH