Protein Info for TX73_000410 in Rhodopseudomonas palustris CGA009

Annotation: PAS-domain containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 837 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 60 to 78 (19 residues), see Phobius details PF12860: PAS_7" amino acids 350 to 460 (111 residues), 52.8 bits, see alignment E=1.3e-17 amino acids 478 to 589 (112 residues), 40.4 bits, see alignment E=9.2e-14 PF00512: HisKA" amino acids 606 to 673 (68 residues), 59.5 bits, see alignment E=7.9e-20 PF02518: HATPase_c" amino acids 719 to 828 (110 residues), 97.3 bits, see alignment E=2.3e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_0082)

Predicted SEED Role

"FIG056333: sensor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (837 amino acids)

>TX73_000410 PAS-domain containing protein (Rhodopseudomonas palustris CGA009)
MSGVLGSIRRTSLSCTSLVHGLAGTAVMVASSPARAADDHLAAITSSLLLDLNRHEMMTL
IIALAALGFSVMSAIMLVRTRQRAVAREAGLRADLQGLQAESDRFQALLFAEPQVLISWA
AGDSRPQVSGDTALFLPLETQSRQPQRVLAFGTWLPPEPALQMDHAVDALLDKGEGFLLQ
LVTSNGRSIEAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPW
PIWTRRSDGTLSFANAAYARATDASDAADAIGRNLELLDSGDRAALARALGDGYEYSGRL
PIVVGGERRYYDVRALKVSGGSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVAVF
DAQRRLSFYNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAY
RAVEAEKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDN
LSEAVAVFGSNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLFDDDVFWQALRG
AITGIDDRRHVLLKIERKDGSVLACKTMPLPDGATMLTFQDITDTENVERALRERNEALE
TADRIKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTEKQAEYVNYITTSTNALMAI
INNILDLASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGD
ERRVVQVLYNLLANAIDFSPSQGTVRLTVRRGETRVAFTVTDSGPGIAPAFKEKMFDLFE
SDPQGSRHRGAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFPIEPAAQRHAAE