Protein Info for TX73_000255 in Rhodopseudomonas palustris CGA009

Annotation: LPS export ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 TIGR04406: LPS export ABC transporter ATP-binding protein" amino acids 85 to 321 (237 residues), 372.2 bits, see alignment E=4.6e-116 PF00005: ABC_tran" amino acids 101 to 246 (146 residues), 126.5 bits, see alignment E=1.8e-40 PF12399: BCA_ABC_TP_C" amino acids 294 to 319 (26 residues), 37.8 bits, see alignment (E = 1.7e-13)

Best Hits

KEGG orthology group: K06861, lipopolysaccharide export system ATP-binding protein [EC: 3.6.3.-] (inferred from 100% identity to rpa:RPA0049)

Predicted SEED Role

"blr0722; probable ATP-binding protein"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.-

Use Curated BLAST to search for 3.6.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (321 amino acids)

>TX73_000255 LPS export ABC transporter ATP-binding protein (Rhodopseudomonas palustris CGA009)
MVDLRGMFRRRGPKAPGFGGARNDITGYGDEVGDLLTTPVRDAPPIARSDAYATPQQQPA
AAAPPRRAAAVQPAAPQAVPASSYLAVHSVEKSFGTRKIVRGVSIYVRRGEAVGLLGPNG
AGKTTVFYMITGLIKADNGAIELDGHDVTKLPMYQRARLGIGYLPQEASIFRGLTVEQNI
RAVLEAVEPDKRKREAQLDNLLQEFNIERLRKSPSIALSGGERRRVEIARALASRPNYML
LDEPFAGIDPIAVGDIQDLVRHLTNRGIGVLITDHNVRETLGLTDRAYIVYAGEILTEGT
PEEIVNDPDVRRLYLGEEFRL