Protein Info for TX73_000015 in Rhodopseudomonas palustris CGA009

Annotation: DNA replication/repair protein RecF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 TIGR00611: DNA replication and repair protein RecF" amino acids 6 to 358 (353 residues), 170.6 bits, see alignment E=2.8e-54 PF02463: SMC_N" amino acids 6 to 374 (369 residues), 62.9 bits, see alignment E=3.1e-21

Best Hits

Swiss-Prot: 52% identical to RECF_AGRFC: DNA replication and repair protein RecF (recF) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K03629, DNA replication and repair protein RecF (inferred from 100% identity to rpa:RPA0003)

Predicted SEED Role

"DNA recombination and repair protein RecF" in subsystem DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (379 amino acids)

>TX73_000015 DNA replication/repair protein RecF (Rhodopseudomonas palustris CGA009)
MTAARITRLTLTHFRNYRGASLTTTADQVVLVGPNGAGKTNCLEAISFLSPGRGLRRATL
EDVANHEGDGSWAVSTEIEGALGLATLGTGIEPPRGDTTTTRRCRIDREPVGSAAAFGDH
LRMVWLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDVRNA
DSHWLDAIERETAELAIAVAAQRGQTALKLAAMLDARGATSAFPSAKLMLDGWMENALTS
EPATAVEDRYRAILRDSRGRDAAAGRTLDGPHLTDLEVIYAPKAMPARDASTGEQKALLI
GLVLAHAQLVAETTSITPLLLLDEVVAHLDPGRREALFTELGKLGAQVWMTGADPMAFAE
IGPAAGIFDVENGQIRPRG