Protein Info for Synpcc7942_2012 in Synechococcus elongatus PCC 7942

Name: spoIID
Annotation: stage II sporulation protein D-like

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF08486: SpoIID" amino acids 120 to 210 (91 residues), 99.3 bits, see alignment E=8e-33 TIGR02669: SpoIID/LytB domain" amino acids 124 to 387 (264 residues), 294.8 bits, see alignment E=4.5e-92

Best Hits

KEGG orthology group: K06381, stage II sporulation protein D (inferred from 99% identity to syc:syc2083_c)

Predicted SEED Role

"possible sporulation protein SpoIID"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31LM7 at UniProt or InterPro

Protein Sequence (407 amino acids)

>Synpcc7942_2012 stage II sporulation protein D-like (Synechococcus elongatus PCC 7942)
MPMATLRSALFASLAAIAVLPTFSPPASAQAAPTIRVGIAIARPQIRVGSSTPAIIRNEQ
GQQIGQLPTQQGSYAQPSANGQVQLGSFRARQIWLEPTNDGLVWIGDRWYRGRLQLILDQ
GAVTAINHVGLESYLYSVVGSEVYASWPTEALKAQAVAARSFVLYRRDRNRDPRFDVGNS
TTWQVYKGIASEAPTTIAAVNATAGQVLTYNNRVIEAVFHASSGGHTENVEDVWSKPLPY
LRGVQDYDQNAPVFNWSQSFSVQELSAKLTGVGRILQIEPLQTTPFGRIRDLRITGDRGS
RVVKGDEVRRALNLRSSLFTVSSEASSNWFDFLRPNPAPQPPSQFTIIGRGYGHGLGLSQ
WGAYGLASQGVDYRRILSHFYQNTNLSPLGGVIAQNSSGGDLISAQD