Protein Info for Synpcc7942_1990 in Synechococcus elongatus PCC 7942

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 48 to 67 (20 residues), see Phobius details amino acids 79 to 96 (18 residues), see Phobius details amino acids 129 to 147 (19 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 197 to 218 (22 residues), see Phobius details PF01169: UPF0016" amino acids 21 to 92 (72 residues), 76.8 bits, see alignment E=6.8e-26 amino acids 137 to 210 (74 residues), 86.1 bits, see alignment E=8.6e-29

Best Hits

KEGG orthology group: None (inferred from 99% identity to syc:syc2106_d)

Predicted SEED Role

"FIG01150902: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31LP9 at UniProt or InterPro

Protein Sequence (220 amino acids)

>Synpcc7942_1990 hypothetical protein (Synechococcus elongatus PCC 7942)
VNIPSLLAIDPNFLKGFTSGLIFISIAELGDKTFLIAALLAMRHRRRWVLLGTVLALALM
TILSVAIGQLANQLLPETWVRWAEVAFFAIFGLKLWRDSLGMPQVGDSAEEEEAEELVLG
AEAKLGKQVTVFTVVLEAFSLVFVAEWGDRTQFTTMALAAAGNAWGVALGAILGHAIVAV
IAVNVGRWVSRHISERVLTQISAGLFLLFAAIALWGIVSK