Protein Info for Synpcc7942_1967 in Synechococcus elongatus PCC 7942

Name: cacA
Annotation: undecaprenyl pyrophosphate phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 288 transmembrane" amino acids 13 to 30 (18 residues), see Phobius details amino acids 50 to 69 (20 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 199 to 219 (21 residues), see Phobius details amino acids 231 to 254 (24 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details PF02673: BacA" amino acids 16 to 274 (259 residues), 263.8 bits, see alignment E=9.7e-83 TIGR00753: undecaprenyl-diphosphatase UppP" amino acids 16 to 273 (258 residues), 269.1 bits, see alignment E=2.2e-84

Best Hits

Swiss-Prot: 100% identical to UPPP_SYNE7: Undecaprenyl-diphosphatase (uppP) from Synechococcus elongatus (strain PCC 7942)

KEGG orthology group: K06153, undecaprenyl-diphosphatase [EC: 3.6.1.27] (inferred from 100% identity to syc:syc2128_c)

Predicted SEED Role

"Undecaprenyl-diphosphatase (EC 3.6.1.27)" (EC 3.6.1.27)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.1.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31LS2 at UniProt or InterPro

Protein Sequence (288 amino acids)

>Synpcc7942_1967 undecaprenyl pyrophosphate phosphatase (Synechococcus elongatus PCC 7942)
MLIAVSSADRLDLWQAIVLGFVQGATEFLPISSTAHLKVVPVVLGWGDPGVAFTAVIQLG
SIVAVLSYFRQDLTYVLRGLVSAVRRQDFRSEPAQMGLGILFGTIPILIGGLLIKRFIPD
YDNSPLRSLAAIAIVSIVMGLLLGIAEQLSKHQRDLSQLRLADGLWMGFAQALALIPGVS
RSGSTLTAGLFQGLKRDTAARFSFLLGIPAITIAGLVELKDLLEAGIDGSSLGVLAIGTL
SSLIFSWLAIAWLLRFLRTHNTWSFVVYRIIFGGVILTAIATGTLQNI