Protein Info for Synpcc7942_1227 in Synechococcus elongatus PCC 7942

Name: radC
Annotation: DNA repair protein RadC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 PF20582: UPF0758_N" amino acids 9 to 91 (83 residues), 85 bits, see alignment E=4.6e-28 TIGR00608: DNA repair protein RadC" amino acids 16 to 234 (219 residues), 247.9 bits, see alignment E=4.6e-78 PF00633: HHH" amino acids 74 to 96 (23 residues), 24.4 bits, see alignment (E = 2.9e-09) PF04002: RadC" amino acids 115 to 233 (119 residues), 127.2 bits, see alignment E=5.4e-41

Best Hits

Swiss-Prot: 67% identical to Y172_ANAVT: UPF0758 protein Ava_0172 (Ava_0172) from Anabaena variabilis (strain ATCC 29413 / PCC 7937)

KEGG orthology group: K03630, DNA repair protein RadC (inferred from 100% identity to syf:Synpcc7942_1227)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31NW2 at UniProt or InterPro

Protein Sequence (244 amino acids)

>Synpcc7942_1227 DNA repair protein RadC (Synechococcus elongatus PCC 7942)
MATSGLRVADLPEDERPRERLMRSGASSLSTAELLAILLGTGQGPGGLSAVGLGQLLLSQ
LGEHQREPLRVLRQITVTELMQIPGIGPAKATAIAAAIELGKRIYQTTTSELLPITSPEA
AAKALSADLMWAEQERFALLLLDVRHNLLAQRVLTIGTATETLANPREIFREALRLGATR
LIVAHNHPSGQVDPSSADLSLTEQLLQLGQALELPVLDHLILGQGHHRSLRDTTGLWQKF
PQGD