Protein Info for Synpcc7942_1082 in Synechococcus elongatus PCC 7942

Name: pacL
Annotation: ATPase, E1-E2 type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 921 transmembrane" amino acids 67 to 84 (18 residues), see Phobius details amino acids 96 to 112 (17 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 290 to 312 (23 residues), see Phobius details amino acids 717 to 740 (24 residues), see Phobius details amino acids 747 to 765 (19 residues), see Phobius details amino acids 791 to 813 (23 residues), see Phobius details amino acids 826 to 849 (24 residues), see Phobius details amino acids 861 to 879 (19 residues), see Phobius details amino acids 891 to 910 (20 residues), see Phobius details PF00690: Cation_ATPase_N" amino acids 15 to 82 (68 residues), 68.3 bits, see alignment 1.3e-22 TIGR01494: HAD ATPase, P-type, family IC" amino acids 99 to 360 (262 residues), 146.4 bits, see alignment E=4.7e-47 amino acids 623 to 730 (108 residues), 117.7 bits, see alignment E=2.3e-38 PF00122: E1-E2_ATPase" amino acids 127 to 319 (193 residues), 178.8 bits, see alignment E=2.8e-56 PF13246: Cation_ATPase" amino acids 400 to 495 (96 residues), 76.7 bits, see alignment E=4.1e-25 PF00702: Hydrolase" amino acids 547 to 668 (122 residues), 69.2 bits, see alignment E=2.4e-22 PF12710: HAD" amino acids 556 to 665 (110 residues), 29 bits, see alignment E=5.1e-10 PF00689: Cation_ATPase_C" amino acids 740 to 916 (177 residues), 174.6 bits, see alignment E=5.9e-55

Best Hits

Swiss-Prot: 100% identical to ATCL_SYNE7: Calcium-transporting ATPase (pacL) from Synechococcus elongatus (strain PCC 7942)

KEGG orthology group: K01537, Ca2+-transporting ATPase [EC: 3.6.3.8] (inferred from 100% identity to syf:Synpcc7942_1082)

Predicted SEED Role

"Cation-transporting ATPase, E1-E2 family"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P37278 at UniProt or InterPro

Protein Sequence (921 amino acids)

>Synpcc7942_1082 ATPase, E1-E2 type (Synechococcus elongatus PCC 7942)
VSASLTDVRQPIAHWHSLTVEECHQQLDAHRNGLTAEVAADRLALYGPNELVEQAGRSPL
QILWDQFANIMLLMLLAVAVVSGALDLRDGQFPKDAIAILVIVVLNAVLGYLQESRAEKA
LAALKGMAAPLVRVRRDNRDQEIPVAGLVPGDLILLEAGDQVPADARLVESANLQVKESA
LTGEAEAVQKLADQQLPTDVVIGDRTNCLFQGTEVLQGRGQALVYATGMNTELGRIATLL
QSVESEKTPLQQRLDKLGNVLVSGALILVAIVVGLGVLNGQSWEDLLSVGLSMAVAIVPE
GLPAVITVALAIGTQRMVQRESLIRRLPAVETLGSVTTICSDKTGTLTQNKMVVQQIHTL
DHDFTVTGEGYVPAGHFLIGGEIIVPNDYRDLMLLLAAGAVCNDAALVASGEHWSIVGDP
TEGSLLTVAAKAGIDPEGLQRVLPRQDEIPFTSERKRMSVVVADLGETTLTIREGQPYVL
FVKGSAELILERCQHCFGNAQLESLTAATRQQILAAGEAMASAGMRVLGFAYRPSAIADV
DEDAETDLTWLGLMGQIDAPRPEVREAVQRCRQAGIRTLMITGDHPLTAQAIARDLGITE
VGHPVLTGQQLSAMNGAELDAAVRSVEVYARVAPEHKLRIVESLQRQGEFVAMTGDGVND
APALKQANIGVAMGITGTDVSKEASDMVLLDDNFATIVAAVEEGRIVYGNIRKFIKYILG
SNIGELLTIASAPLLGLGAVPLTPLQILWMNLVTDGIPALALAVEPGDPTIMQRRPHNPQ
ESIFARGLGTYMLRVGVVFSAFTIVLMVIAYQYTQVPLPGLDPKRWQTMVFTTLCLAQMG
HAIAVRSDLLTIQTPMRTNPWLWLSVIVTALLQLALVYVSPLQKFFGTHSLSQLDLAICL
GFSLLLFVYLEAEKWVRQRRY