Protein Info for Synpcc7942_1059 in Synechococcus elongatus PCC 7942

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 75 to 101 (27 residues), see Phobius details PF07466: DUF1517" amino acids 124 to 309 (186 residues), 225.3 bits, see alignment E=3.3e-71

Best Hits

KEGG orthology group: None (inferred from 100% identity to syf:Synpcc7942_1059)

Predicted SEED Role

"Hypothetical glycine rich membrane protein DUF1517"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31PD0 at UniProt or InterPro

Protein Sequence (310 amino acids)

>Synpcc7942_1059 hypothetical protein (Synechococcus elongatus PCC 7942)
MRKPFLKSIGRLLVVVLLVGSLTLSAAQSAWAARGGRIGGGSFSAPSRSFSSPSRSYSGG
GGGYYRGGGGFGFPFVLPLFFGGGGGLFGFLIMIAIAGFLLRAFQNASGGEGNNARLAPV
SNSQVAIAQVQVGLLAGARSLQRDLEALAMRANTNSKTGLANVLQETTLALLRHPEYWAY
GSAEAQKVTWGTAENAFNRLTLMERSKFSGEGVSNVDGQVKQATHTATAIDPLSQAPAEY
IVVTLLVAATTQLRLPALNSTSDLQQALRQIGAIGSESLLAVEVLWSPDSESESLTRDDV
MANYPDLRVL