Protein Info for Synpcc7942_0836 in Synechococcus elongatus PCC 7942

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 TIGR04049: AIR synthase-related protein, sll0787 family" amino acids 11 to 328 (318 residues), 466.1 bits, see alignment E=2.6e-144 PF00586: AIRS" amino acids 51 to 157 (107 residues), 76.4 bits, see alignment E=2.4e-25 PF02769: AIRS_C" amino acids 197 to 307 (111 residues), 40.4 bits, see alignment E=3.4e-14

Best Hits

KEGG orthology group: K07123, (no description) (inferred from 100% identity to syc:syc0704_d)

Predicted SEED Role

"Selenophosphate synthetase-related protein MJ0640"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31Q02 at UniProt or InterPro

Protein Sequence (338 amino acids)

>Synpcc7942_0836 hypothetical protein (Synechococcus elongatus PCC 7942)
MSDAAIAQDLAALAAQLQTLAGLQGKRDIQAAAASLPHRPFPKLGLAAALGDDAALLPAT
ANRLLFACEGIHPDLVAEDPWFAGWSGVLVNLSDIAAMGGRPIAVVNSLWSRDRQHADQV
FAGLQFAAEKFGIPIVGGHSNLQSPYSALSVAVLGQVGPHVLSARSAQAGDRCYLLINRD
GQFYRHYPFWDAATGTAPEQLRRHWELMAQLADAGLVSAAKDVSMGGLIGTAVMFAETSG
AGLDLHLDRLSYPAGVSRDRWLTCFPSFGFLLAVPEACCDRFLQRVATEPDLTCDHLGSF
TNTGQVRLCDRQAQVCFWDCQEQSLMGFSALTDPESPH