Protein Info for Synpcc7942_0779 in Synechococcus elongatus PCC 7942

Annotation: metal dependent phosphohydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 820 transmembrane" amino acids 70 to 90 (21 residues), see Phobius details amino acids 391 to 411 (21 residues), see Phobius details amino acids 423 to 442 (20 residues), see Phobius details amino acids 458 to 481 (24 residues), see Phobius details amino acids 512 to 534 (23 residues), see Phobius details amino acids 540 to 567 (28 residues), see Phobius details PF07697: 7TMR-HDED" amino acids 97 to 198 (102 residues), 55.8 bits, see alignment E=9.9e-19 amino acids 207 to 386 (180 residues), 95.5 bits, see alignment E=7.3e-31 PF07698: 7TM-7TMR_HD" amino acids 391 to 580 (190 residues), 77.8 bits, see alignment E=1.6e-25 TIGR00277: HDIG domain" amino acids 602 to 701 (100 residues), 78.8 bits, see alignment E=1.1e-26 PF01966: HD" amino acids 605 to 753 (149 residues), 49.8 bits, see alignment E=6.1e-17

Best Hits

KEGG orthology group: K07037, (no description) (inferred from 100% identity to syf:Synpcc7942_0779)

Predicted SEED Role

"Membrane protein containing HD superfamily hydrolase domain, YQFF ortholog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31Q58 at UniProt or InterPro

Protein Sequence (820 amino acids)

>Synpcc7942_0779 metal dependent phosphohydrolase (Synechococcus elongatus PCC 7942)
MLAERLFTTPSSHVGSCDLASPSMISLPGWIVRPFVRQQPNWSDREPDRFALGPACLVIT
PKRRRSYRRCLALGILGIVAMTALAGQRFYNQPRLDVGMRAAVTITAPDSAQVVDRLSTD
RRRSEARSGTTAVLRINATTNQQLRQTLNAFLAQGEEVREQLGAFPYLPVAQLSEQTQLT
LRQLSPQRWRQLQQALTQPNQPLTDPELQQLLDSLEQVRRRSPQTWPNVLSSIRQAQQRY
TRARDSLDTLQSSARPSPFQPELLDLSNRQWQQLQLTLREALDRILAQGLPQGLPEPVIQ
NTIRSHLGNQLSNSAVLVGQTLLGQVINNQSTLEIDQEKTRFLAELRASAVDDVVVPVRK
GQVIVASGEVIREREFALLDYFGLTRRSPNWPGLIGFGGIVTMGLAVFWLMQRRWQPNLR
VGDRLLLLVLALSVPLGYSTPLHVSTLPAVGLLAGSFYGARLGSTLVVLLTAIAPLGLNL
VPVVDLNSLMASSVAGLVGAVRVGSLRSREEVALLGLGVGMAEGVTFLLCSLINPPAGLF
FASWISLLTTVGIHALRGMAWSVVALGISPYLERIFDLVTPIRLAELANPNRPLLRRLAA
EAPGTFQHTLFVSSLAEAAARALGCNMELVRTGTLYHDVGKLCEPCCFVENQQSGKNQHD
QINDPWQSAAIIQRHVSEGVQLARRAGLPKAVRDFIPEHQGTMLIAYFYHQAKELAQKDP
DRYTVNEQDFRYPGPIPQSRETGIVMLADSCEAALRSLENATMEDALRMVKRIIRARWQD
NQLAASGLSRRDLATIAEVFVQIWQQFHHKRIAYPSTASN