Protein Info for Synpcc7942_0708 in Synechococcus elongatus PCC 7942

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 transmembrane" amino acids 37 to 59 (23 residues), see Phobius details PF03109: ABC1" amino acids 112 to 363 (252 residues), 257.7 bits, see alignment E=4.4e-81

Best Hits

Swiss-Prot: 61% identical to Y1919_SYNY3: Uncharacterized protein slr1919 (slr1919) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: None (inferred from 100% identity to syc:syc0822_c)

Predicted SEED Role

"ABC1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31QC9 at UniProt or InterPro

Protein Sequence (583 amino acids)

>Synpcc7942_0708 hypothetical protein (Synechococcus elongatus PCC 7942)
VASALLQFWLPPVSFPLAAYDRYDAEAITRYYRRRPWLAIARLSVIFWNFLGFGWRLLWD
QRQQAGDAHLPERAAELRQILTNLGPTFIKAGQALSTRPDLVRVDFLDELTKLQDQLPPF
PNDQAFEIMAEELGRPVSQSFEELSPEPIAAASLGQVYKGKLFSGETVAVKVQRPNLLPT
ITLDLFLIRWAATWFGSLLPLNLGHDLTLIVDEFGYKLFEEIDYENEGRNAERFAENFRD
CPYVKAPKIYWAFSSRHVLTLEWIDGVKLTAAAELDQLGINADAVVKTGVISGLQQLLEF
GFFHADPHPGNLFALPSSPRPDGLGCMAYIDFGMMDQLDQLTKETLVDAVVHLINRDYVE
LAQDFITLGFLTPDSDLTPIIPALESVLGDIMGEKVRDFNFKTITDRFSELMYDYPFRVP
AKFALIIRSLVTQEGLALSVNPDFRIVDVAYPYIAKRLLQGESPQLRRRLLEVLVKDGKF
RWNRLENLIAIAQNDGGFDLLPTAQMGLQYLFSDEGAYLRNQLLLALTENERLQTEPLQR
LWELLRPELEPARVAGHAFNAFVAFSRDRAAAFFPTLALESNR