Protein Info for Synpcc7942_0632 in Synechococcus elongatus PCC 7942

Name: rplJ
Annotation: 50S ribosomal protein L10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 PF00466: Ribosomal_L10" amino acids 5 to 102 (98 residues), 102 bits, see alignment E=8.2e-34

Best Hits

Swiss-Prot: 100% identical to RL10_SYNE7: 50S ribosomal protein L10 (rplJ) from Synechococcus elongatus (strain PCC 7942)

KEGG orthology group: K02864, large subunit ribosomal protein L10 (inferred from 100% identity to syc:syc0893_d)

Predicted SEED Role

"LSU ribosomal protein L10p (P0)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31QK5 at UniProt or InterPro

Protein Sequence (175 amino acids)

>Synpcc7942_0632 50S ribosomal protein L10 (Synechococcus elongatus PCC 7942)
MGRTLANKQDIVTELKGLVDEAQMAFVVDYQGLTVAEITDLRNRLEASNSVCKVTKNTLM
RRAIADADDWQPLTELLKGTNAFVLVKDDPGSAIKAYQAFQKDTKKTELRGGLLEGRLLS
SDELKAIGDLPSKEVLIAQIAGAINGVATKLAVGIKEVPNSLARGIKAVSEQTDA