Protein Info for Synpcc7942_0614 in Synechococcus elongatus PCC 7942

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details PF11832: DUF3352" amino acids 11 to 546 (536 residues), 495 bits, see alignment E=1.4e-152

Best Hits

KEGG orthology group: None (inferred from 100% identity to syc:syc0910_d)

Predicted SEED Role

"FIG01150472: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31QM3 at UniProt or InterPro

Protein Sequence (559 amino acids)

>Synpcc7942_0614 hypothetical protein (Synechococcus elongatus PCC 7942)
MKLRTFYLALTAVALSLLVSGLGLFVWLWNGSPLRLLNGSRISEPAAAVFVPKQAPLMTS
LLVAPQRLQALSQVVTPTRQRSQVDQEWQQLQEALLTGFKVDFANDIAPWLGDEVTFAVT
SLDRDRDSSNGRQPGYLVAFSTADGELARQALQRFWQDRAATGTQLVFETYKGVKLIYGD
SALVGRRVKPLATAVFGDRFLLAANDPKVLREAINNAQVPDLNLQQSESYQRALQSLQPR
RLGLLYADLDNLGDWLNEKGLSRKSEESDRRNQFQGLTLSLALNKAGILADTALIAKEPL
PSSTFTKSDRPSAALRYLPADSRFALGSQNLAGVWQELQQRFGDYPAWQELQQQLLATVQ
QQLGLNLQTEIIDWIDGDYALGQSGDDWIFAVDRRQTAASNGIEQLDAIASDRGYTPTNI
DLDGHEITAWTQLRTGSKRRNLQIQATVRGGHGRDGDFEVFATSLDRLATALEGRDSLTT
NPDFRQAQRQLPQPNQGVLYLDWQASALPLTQRWPVLQLIALPLQPLLEHVQAIAIASPT
PPEDSTDLQRLSIELLLRS