Protein Info for Synpcc7942_0598 in Synechococcus elongatus PCC 7942

Annotation: Peptidoglycan-binding LysM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 transmembrane" amino acids 13 to 26 (14 residues), see Phobius details amino acids 95 to 111 (17 residues), see Phobius details PF01476: LysM" amino acids 146 to 187 (42 residues), 44.9 bits, see alignment 8.9e-16 amino acids 284 to 327 (44 residues), 63.7 bits, see alignment 1.2e-21 PF01551: Peptidase_M23" amino acids 486 to 583 (98 residues), 125 bits, see alignment E=1.1e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to syf:Synpcc7942_0598)

Predicted SEED Role

"putative peptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31QN9 at UniProt or InterPro

Protein Sequence (590 amino acids)

>Synpcc7942_0598 Peptidoglycan-binding LysM (Synechococcus elongatus PCC 7942)
VANGYPHSSTVAVLPVFDLPALWLVTGKLTKFRLGGRSLKRGFPQKVSGLPYYTLDSMPE
IAHQGCAVSEPETAEEPLATATSGSWSGSGRKRTLAMMGLALTVAGTDSLLLRQATAVAA
TNGVMPQLFDNEAEAPARTLSSQEIHRVQPGETLWSIARAHGLTVAQLLTYNQLTEGTTL
RVDQVLNLQPKAVEPAPIATAAPLVQDPVQQHLLALAGDSRLPSPAAERSVEPISSVPPQ
ATPTLPRPVTAEAPVIQPRSLAPAAVAIRPLSPATELSPEPQAYTVQPGDSLSRIATRFG
LDLQDLLQVNRLSNPNLIFVGQRLTIPPAGQARLAPVATLPPLLRQQVTEDTSSRIAANL
GSGLNAELTIESLSSPPPSNLKSLDITAQTSFSGPSLSSSRSLTPALPSATPFKPQQPEP
DKVAVAPLGSENYEPLLASLLKTAVAPELPSLNSDELLPGGGDRFAGYIWPARGILSSGY
GWRWGRMHRGIDIAGPVGTPILAAAPGVVVTAGWNSGGYGNLVEIQHPNGSLTLYAHNNR
ILVRPGERVQQGQIVAEMGSTGRSTGPHLHFEVHPRGNGAVNPIAYLPSR