Protein Info for Synpcc7942_0528 in Synechococcus elongatus PCC 7942

Annotation: Lipopolysaccharide biosynthesis proteins LPS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF01501: Glyco_transf_8" amino acids 55 to 305 (251 residues), 78.3 bits, see alignment E=3.7e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to syf:Synpcc7942_0528)

Predicted SEED Role

"FIG01151503: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31QV9 at UniProt or InterPro

Protein Sequence (329 amino acids)

>Synpcc7942_0528 Lipopolysaccharide biosynthesis proteins LPS (Synechococcus elongatus PCC 7942)
MVIVQVDAVPTHDLCQRSDQVRVRDESGVTPIAPPDETATMTLDIVLGLNQPIDFTLPVV
INSAVQNSRQRETLRFNIVVPTGQTEHFQALLETTFPSPQFQWRLGTFQPSADLADYLAH
KYSRDRGERLLGRFMQFSRVWLPQVFPDLTRILYFDTDVVLLEDPAILDQQAGDFNDQIF
FAAVPHSRPAWLYFKKPWRAHSYIKAMGTTFNSGVMVTDLRFWTEAVYQRIQAALDRDRQ
FRYRFLEPGDEALLNACFPNYRALPKRWNRCGYGNARFVARLLACDPQEAAIIHWSGGHH
KPWNTHDIIYGDLWRRYANLPGLLLPNPI