Protein Info for Synpcc7942_0518 in Synechococcus elongatus PCC 7942

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 24 to 43 (20 residues), see Phobius details amino acids 58 to 80 (23 residues), see Phobius details amino acids 160 to 182 (23 residues), see Phobius details amino acids 218 to 276 (59 residues), see Phobius details amino acids 282 to 301 (20 residues), see Phobius details amino acids 313 to 341 (29 residues), see Phobius details PF01594: AI-2E_transport" amino acids 6 to 348 (343 residues), 216.7 bits, see alignment E=2.5e-68

Best Hits

KEGG orthology group: None (inferred from 100% identity to syc:syc1002_c)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31QW9 at UniProt or InterPro

Protein Sequence (387 amino acids)

>Synpcc7942_0518 hypothetical protein (Synechococcus elongatus PCC 7942)
MRLGQWLGFTGILAAAYILWQLRQVMLLLFAAVVLAVIINHLARQLQQRLRWSRRTSLAV
TLLGITIGGGLLIALLLPPLLVQFQELLRLAPQGFAKLLTWVEERLVDVVKILPGFSDDR
SARSFVDSTIRDLIQGFGDRRNWSSFSQQLGPLARNFLSIFNNTLAAAAQLLLVIVLMLM
MLSNPQAYRQTFLRLLPSFYRRRADEVLSACEISLSDWFLGILISSSAIAILSWLGLVIL
GVKLALVNAIIAGFLNLIPNLGPTLSAVFPISIVLLDEPWKAWVVLVIYIIIQQLESYWL
TPTIMARQVSLLPALTLIAQIVFASIFGLAGLILALPLAVVAKVFFEQVLIHDVLDRWQH
LHYFKHPEWIGPHPESAPPAIAEEETF