Protein Info for Synpcc7942_0085 in Synechococcus elongatus PCC 7942

Annotation: HAD-superfamily hydrolase subfamily IA, variant 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 228 PF00702: Hydrolase" amino acids 7 to 180 (174 residues), 76.8 bits, see alignment E=4.7e-25 PF13419: HAD_2" amino acids 9 to 185 (177 residues), 80.5 bits, see alignment E=2.7e-26 TIGR01509: HAD hydrolase, family IA, variant 3" amino acids 46 to 186 (141 residues), 62.3 bits, see alignment E=5.9e-21 PF13242: Hydrolase_like" amino acids 141 to 188 (48 residues), 27.8 bits, see alignment 2.9e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to syf:Synpcc7942_0085)

Predicted SEED Role

"Putative phosphatase YieH" in subsystem 2-phosphoglycolate salvage

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31S52 at UniProt or InterPro

Protein Sequence (228 amino acids)

>Synpcc7942_0085 HAD-superfamily hydrolase subfamily IA, variant 3 (Synechococcus elongatus PCC 7942)
MQTSPFQLVIFDCDGVLVDSERITNRVFADMLNELGLLVTLDDMFEQFVGHSMADCLKLI
ERRLGNPPPPDFVQHYQRRTRIALETHLQAVPGVEEALDALELPYCVASSGDHQKMRTTL
SLTKLWPRFEGRIFSVTEVPRGKPFPDVFLLAADRFGVNPTACAVIEDTPLGVAAGVAAG
MQVFGYAGSMPAWRLQEAGAHLIFDDMRLLPSLLQSSPKDNSTALPNP