Protein Info for Synpcc7942_0050 in Synechococcus elongatus PCC 7942

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 848 transmembrane" amino acids 461 to 478 (18 residues), see Phobius details PF00535: Glycos_transf_2" amino acids 131 to 237 (107 residues), 88.8 bits, see alignment E=1e-28 PF10111: Glyco_tranf_2_2" amino acids 162 to 327 (166 residues), 42.1 bits, see alignment E=1.9e-14 PF00534: Glycos_transf_1" amino acids 624 to 766 (143 residues), 43.4 bits, see alignment E=6.9e-15 PF20706: GT4-conflict" amino acids 639 to 836 (198 residues), 39.9 bits, see alignment E=7.1e-14 PF13692: Glyco_trans_1_4" amino acids 694 to 766 (73 residues), 27.5 bits, see alignment E=8.3e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to syc:syc1449_c)

Predicted SEED Role

"glycosyl transferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31S87 at UniProt or InterPro

Protein Sequence (848 amino acids)

>Synpcc7942_0050 hypothetical protein (Synechococcus elongatus PCC 7942)
MALLWLRPHWASPDQKAVLQISAALQQVTQETASLLIDTAGTEEEQVNTALIEAAWAASE
NGVNIEEIACHGTDCQTGLLGALLERNQSCLQTVKQNTDLQRIPEPLATQLINCLHQFPQ
HWQPSAQSLAVIVPTYNCASKIEQTLKSIEASIQFFQDNLPFSSLYNIEVIIVDDASTDN
TVAVIQAYINNKTHFQLVCHRFNRGAGIARNTGVNFSQGEVLFFCDGDDLFLEKHLLLGV
LALEISLDEPQILDRLFEYAGISLDQDVTKFIRNINGHPPYGFVSLGVKVDEEILPEWHQ
RIIDSLPINLVVRRSVFQFVEGFPSQLVYKRLRCTEDIALRDCLYRFCNGVQIDVETVQY
QRYPNNSLDRQLRKFQSPLAEAANLENNNSDDLQLESNLRLTKINFLLNKIRFAENSVKN
FITLFEKDQTNILNNVQPDSDLERVISNCNKKKQRGIAFDWLISTYTGWGVFGTNFILQI
YRQKGSWFPICLKSPYLNVQDFHPLVDPQVLDLPVLDPENDNYVLKRLNQGLNQKLLILQ
AMMNDFQSREYEFPFTHRAGLIFMEDTYITPSGKERANRLPVIISGSTWCNDLVAAHYQG
NAYGIPQGVDPTLFQPSQAAGYFGDRFVIFSGGKLEYRKGQDIVVKAFKHFQQQHPEALL
LCNWSTALPQYMNGLQHAGYVEGLPKTEGDLRSNISQWLIENGLPEDSFYCLGFTPNIQM
PHVFREAHAAIFPNRAEGGTNLVAMEAIACGIPTLLSKNTGHLDLIHLFGIDALETQNPV
KPYYPYVGTEGWGQSDPEEVVAWLEKVYQNYQEQKTKALSHSVSIHQTMSWEIQIKKMMG
AIAHHIKI