Protein Info for Synpcc7942_0047 in Synechococcus elongatus PCC 7942

Annotation: TPR repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 788 PF03016: Exostosin" amino acids 117 to 277 (161 residues), 92.3 bits, see alignment E=1.6e-29 PF13432: TPR_16" amino acids 360 to 424 (65 residues), 20.9 bits, see alignment E=1.9e-07 amino acids 399 to 457 (59 residues), 17.8 bits, see alignment 1.8e-06 amino acids 471 to 509 (39 residues), 26.4 bits, see alignment 3.7e-09 PF13176: TPR_7" amino acids 394 to 421 (28 residues), 16.1 bits, see alignment (E = 4.3e-06) PF14559: TPR_19" amino acids 402 to 456 (55 residues), 30.1 bits, see alignment 2.2e-10 amino acids 471 to 509 (39 residues), 29.2 bits, see alignment 4.2e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to syf:Synpcc7942_0047)

Predicted SEED Role

"FIG01155682: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q31S90 at UniProt or InterPro

Protein Sequence (788 amino acids)

>Synpcc7942_0047 TPR repeat (Synechococcus elongatus PCC 7942)
MAYFYLAEAGDWSFRTVWHDRFFTVLKHHPARTEKVEQADYIFLDADFALETNWPYYGSQ
RKAILKGDRFPTDEEILAFLFDHPVSGYGKPLVLINMNPLAQWPAIAQVLPDVVVVSHCH
TLGNYRVGIDVSFPPMPLLDQHCYPSRDRSTLLSFRGANSHPVREQLQRLHQPPEIAAEL
IQQSYWGTLNYVDEAEGLSAEQQVYTDLIARSRFSVAPRGHDIFSYRLLEVMAGGAIPVI
LADDWVLPFSELLDWSEFSLSVAEDRCWELPQLLQAISTDQWQVMQQHLQQVYQHYFYSL
ARQVQTLWQILDQRSLHPSASEVEIEAVLLSQAERYRLKGDLEAAATYLATLPRSPARIL
EQARLALTQQQPKAALALLDSMVMPEAEQGEHYNLLGVAQTQLGEWDTAIAIYRQGLQAQ
PHHPKLRTNLCVALRQQEQWEEALALSQALLEEVPAAIDRLLLQADTLNLAGRYDQALSL
YQQVVAREPERANAQLAIAEILLRQGKAEGWDIYEARFAAEPSLAALAAHYPQPRWQGVE
LGQRSLLVWGEQGYGDQIQFSRYLWVLRDRYPQARIQFQTDAVLVPLFAEPLASLGIKVI
PAQITEELFDFQVPLLSLPRLVWPSLKDIPYREGWLPCPLPPPREDQNHKFRVGIVWLAG
QRAGIQKSATADRRSCSLEAMLELVRESMQRSDLEVVSLQLGYEGRLPEGIQDWSNRLVD
FSATARVLMELDLLVTVDTAIVHLAGAMRTPAKVLLAYPADWRWQQNLELTWYSSIELCY
FAHLLSSF