Protein Info for SMc04382 in Sinorhizobium meliloti 1021

Annotation: beta-(1,2)-glucan production associated transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2832 transmembrane" amino acids 119 to 140 (22 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 410 to 432 (23 residues), see Phobius details amino acids 444 to 468 (25 residues), see Phobius details amino acids 809 to 826 (18 residues), see Phobius details amino acids 832 to 854 (23 residues), see Phobius details amino acids 881 to 904 (24 residues), see Phobius details amino acids 934 to 953 (20 residues), see Phobius details amino acids 960 to 979 (20 residues), see Phobius details amino acids 2544 to 2561 (18 residues), see Phobius details PF10091: Glycoamylase" amino acids 1299 to 1506 (208 residues), 53.5 bits, see alignment 3.5e-18 PF06165: Glyco_transf_36" amino acids 1562 to 1807 (246 residues), 224.5 bits, see alignment E=2.3e-70 amino acids 2073 to 2314 (242 residues), 227.1 bits, see alignment E=3.9e-71 PF17167: Glyco_hydro_36" amino acids 2344 to 2769 (426 residues), 359.1 bits, see alignment E=4.5e-111

Best Hits

Predicted SEED Role

"Cyclic beta-1,2-glucan synthase (EC 2.4.1.-)" (EC 2.4.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.-

Use Curated BLAST to search for 2.4.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P20471 at UniProt or InterPro

Protein Sequence (2832 amino acids)

>SMc04382 beta-(1,2)-glucan production associated transmembrane protein (Sinorhizobium meliloti 1021)
MLQNTTQSNLPREPEAKQIDYNDSIRSTYFSIDDLRACGASLAEKGTSALPGFFPFEFRA
RHRENEKEILRVYRATAADVEAGASITPAAEWLLDNHHVVEEAIQEVRRDFPRRFYRQLP
TLSVSGTVIPRTMALAWLYVAHTHSTVTRESITAMVEGFQEHETLKIGELWALPSILRFV
LIENLRRIAIRVERSRGMRRKANEVADQLIRLNDPEGCRTLLVESEALAADNTFIAQLLY
RMRDGSQSSGAVIAWIEERLERRGTDVEEALVAEQNRLSSGNATMSNIIRSLREIDDTDW
AVWFESVSKIDATLREGSDYAALDFGSRNTYRDTIEKLARRSGHSEHEVTEIAIEMVEEA
KAAAAVEAPLQEPNVGSFLVGKQRLALEKRIGYSPSIFQHLIRSVRKLDWFAIAGPNILL
TILAMIVVYAFVSPMDIPSGAKLIMLLLFALPASEGAMGLFNTVFTLFAKPSRLVGYEFL
DGIPEDARTLVVVPCLIAKRDHVDELVRNLEVHYLANPRGEIYFALLSDWADSKSEEAPA
DTDVLEYAKREIASLSARYAYDGKTRFFLLHRRRLYNEAEGVWMGWERKRGKLHELNLLL
RGDRDTSFLQGANMVPEGVQYVMTLDSDTRLMRDAVTKLVGKLYHPINRPVVNPRTQEVV
TGYSLLQPRVTPSLTTGSEASAFQRIFTINRGIDPYVFTVSDVYQDIAGEGSFTGKGLYH
VDAFEAALKSRIEENAVLSHDLLEGSYARCALVTDIELVEDFPIRYEVEMSRQHRWARGD
WQLLPYIFNPKNGLSMLGRWKMYDNLRRSLIPVAWLAASVMGWYYMEPTPALIWQLVLIF
SLFVAPTLSLISGIMPRRNDIVARAHLHTVLSDIRAANAQVALRIVFIAHNAAMMADAIV
RSLYRTFVSRKLMLEWRTAAQVQSAGHGSIGDYFRAMWTAPALALVSLALAAISDTGLPF
IGLPFALIWAASPAVAWFVSQSAETEDQLVVSEEAIEEMRKIARRTWRYFEAFVTAEQNF
LPPDNFQETPQPVLAERTSPTNIGVYLLSVMSARSFGWIGFEETITRLEQTIATIDRMPK
YRGHLFNWYRTRGLEPMEPRYVSSVDSGNLAGHLIAVSSMCREWAEAPSAHVQGNLDGIG
DVAAILKEALNELPDDRKTVRPLRRLVEERIAGFQNALAAVKRERELASIRVINLAVLAR
DMHKLTVNLDHEVRTVQSGEVATWAGSLVAACEAHIADGVFDLGAIEALRQRLLVLKERA
RDIAFSMDFSFLFRPERRLLSIGYRVNANELDEACYDLLASEARLTSLFAIAKGDLPTEH
WYKLGRPIVPIGARGALVSWSGSMFEYLMPPLVMQERQGGILNQTNNLVVQEQINHGRRL
GTPWGISEAAFNARDHELTYQYTNFGVPTLGLKRGLGQNAVIAPYASILACMYDPKSALA
NLARLREVGALGAYGYHDAVDFTPTRVPEGQKCAVVRNYYAHHHGMSVAAVANVVFNGQL
REWFHADPVIEAAELLLQEKAPRDIPVMAAKREPEALGKGQADLLRPEVRVVEDPINQDR
ETVLLSNGHYSVMLTATGAGYARWNGQSVTRWTPDPVEDRTGTFIFLRDTVTGDWWSATA
EPRRAPGEKTVTRFGDDKAEFVKTVGDLTSEVECIVATEHDAEGRRVILLNTGTEDRFIE
VTSYAEPVLAMDDADSSHPTFSKMFLRTEISRHGDVIWVSRNKRSPGDPDIEVAHLVTDN
AGSERHTQAETDRRRFLGQGRTLAEAAAFDPGATLSGTDGFTLDPIVSLRRVVRVPAGKK
VSVIFWTIAAPDREGVDRAIDRYRHPETFNHELIHAWTRSQVQMRHVGITSKEAASFQML
GRYLVYPDMHLRADAETVKTGLASQSALWPLAISGDFPIFCLRINDDGDLGIAREALRAQ
EYLRARGITADLVVVNERASSYAQDLQHTLDSMCENLRLRGLSDGPRQHIFAVRRDLMEP
ETWSTLISASRAVFHARNGTISDQIARATSLYSKSSEKKEEGAEMLLPVIREADARTAVE
LDGGDLDFWNGFGGFAEDGREYAVRLRGGEATPQPWINVISNEQFGFHVSAEGAAFSWSR
NSRDYQLTPWTNDAVVNRPGEAIFVRDMASGAVLTPYAALSRRKSALFETRHGLGYSRFL
STQDELEIEAMHTVHRTLPAKLVRLTIRNRSSAARKLRVYGYAEWVLGNNRSRTAPFVLS
EWDESAKTLVATNPYSIDYPGRCAFFASDGDIAGYTASRREFLGRAGGILAPQAVISGAE
LTGSTDVDGDACAALATDITVEAGVERQVTFFLGDADNPDQVRAVLEELRADSFGAALEA
AKAFWGDFTGVVKVETPDRAFNHMINHWLPYQALGCRIMARSAFYQASGAFGFRDQLQDT
LAFLIHRPALARAQILNAAARQFVEGDVQHWWLPGTDAGVRTMISDDVVWLAHAVAHYCA
VTGEEDILKEKVPFITGPALEEGQHDSFYKPDVADEVGDVYEHCARALDLAIHRTGANGL
PLILGGDWNDGMNRVGEAGEGTSVWLGWFLAGTLRAFLPYARARKDKPRVALWERHLEAL
KDALEQAGWDGDYYRRGYYDDDTPLGSAENGECRIDSIAQSWSTLSGEGDKERSLRAMDA
VMAELVDPEKRIVRLFTPPLETTKQDPGYIKAYPPGVRENGGQYTHAATWVVLAFAAQER
AEEAWRTFRMLNPVSHALSQVDAEHYRVEPYVVAADIYGEGALAGRGGWTWYTGSAGWLY
RAGVEGILGIRKRGDKLLIRPVLPSEWPGYSAEVRVNGTTHRISVSRDSKSGEPVVSVNN
SVTKNAHEGVLL