Protein Info for SMc04347 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 683 PF00111: Fer2" amino acids 21 to 68 (48 residues), 25.1 bits, see alignment 2.8e-09 PF17650: RACo_linker" amino acids 128 to 219 (92 residues), 86.9 bits, see alignment E=1.4e-28 PF17651: Raco_middle" amino acids 222 to 382 (161 residues), 164.7 bits, see alignment E=3e-52 PF14574: RACo_C_ter" amino acids 386 to 654 (269 residues), 303 bits, see alignment E=3e-94

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_1961)

Predicted SEED Role

"Methyltransferase corrinoid activation protein Rsph17029_1409"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92P11 at UniProt or InterPro

Protein Sequence (683 amino acids)

>SMc04347 hypothetical protein (Sinorhizobium meliloti 1021)
MLNVPSKDEKNDPLVLFMPSGKRGRFPVGTPILDAARSLGVYVESVCGGRATCGRCQVSV
QEGNFAKHKIVSSSDHISPIGPKEQRYASVRELPDGRRLSCSSQILGDLVIDVPQDTVIN
AQVVRKAASDRVIERNAAVQLCYVEIDEPDMHKPLGDLDRMKAVLEKDWGWKDLLIAPHL
IPQVQGILRKGNWAVTAAIHRDMDSSRPFIVALWPGLKNEAYGVACDIGSTTIAMHLVSL
LSGRIVASSGTSNPQIRFGEDLMSRVSYVMMNPDGREAMTKAVREALNGLIGKVCAEGEV
DRHDILDMVVVANPIMHHLFLGIDPTELGQAPFALAVSGALQYWAHEIDIEVNRGARLYM
LPCIAGHVGADAAGATLSEGPHRQDKMMLLVDVGTNAEIVLGNRERVVAASSPTGPAFEG
AEISSGQRAAPGAIERVRIDPETLEPRFRVIGVDKWSNEEGFAEAAAAVGVTGICGSAII
EVVAEMYLTGIISQDGVVDGAMVAKSPRIIPNGRTFSYLLHEGEQRITVTQNDIRAIQLA
KSALYAGIKLLMEKQGVDHVDTIRFAGAFGSFIDPKYAMVLGLIPDCDLTEVKAVGNAAG
TGALMALLNRGHRREIEQTVRKIEKIETALESKFQEHFVNAMAMPNKVDAFPKLAEVVTL
PARKSLTDDGGEGSGRRRRRSRE