Protein Info for SMc04176 in Sinorhizobium meliloti 1021

Annotation: transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 854 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 257 to 279 (23 residues), see Phobius details amino acids 300 to 322 (23 residues), see Phobius details amino acids 334 to 357 (24 residues), see Phobius details amino acids 377 to 396 (20 residues), see Phobius details amino acids 407 to 430 (24 residues), see Phobius details amino acids 450 to 471 (22 residues), see Phobius details amino acids 477 to 496 (20 residues), see Phobius details amino acids 530 to 554 (25 residues), see Phobius details amino acids 574 to 598 (25 residues), see Phobius details amino acids 625 to 645 (21 residues), see Phobius details amino acids 651 to 679 (29 residues), see Phobius details PF00924: MS_channel_2nd" amino acids 667 to 734 (68 residues), 76.4 bits, see alignment E=1.5e-25 PF21082: MS_channel_3rd" amino acids 742 to 823 (82 residues), 56.7 bits, see alignment E=2.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc04176)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92NZ5 at UniProt or InterPro

Protein Sequence (854 amino acids)

>SMc04176 transmembrane protein (Sinorhizobium meliloti 1021)
MHLLEKLRALSIALSFGALTLAAGGSAVAQEPEPSVEQTRPAQQAAPAQPLQPAQSVQPA
PQAEPAQPATQTGTGQAPDAASPVLQQAEDQLAQADRELKRLIERTNAVEDDDAMLAELR
VQVDELSKQIIAASVPTRPRLDEIKARLTELGDPPGEGQPPEDAVITDERKRLLAERGAI
NALTGRAENLSVEARKLANRITATRRAIFSNTLLRHTDVSAAMLSEAVTATMHEAMALSR
SIGGWLTFAWNYKRVPLLSAIFLSLCAALLFLVGGYRLFSPVLMRHEEDDEPTYFRQLSL
AFWSTLIPTLALAAFAMSSYFFLSSFNVLRPDIAPIVAITLAMGVVLFFIARLAGAVLSP
NRSSWRLVRVSDRGAKMLMVPIFAMALVNGLDYLLGSISESLGSPVVLTIAKSFVASIII
GLILMSMAWIRPVLRADEPYDAPGRPWPRVISLSFLLLGAALIATALSGYVGLARFIATQ
ITVTSAILVTVYIGLLTGKSVSKQGAFAETVAGRYLERRFHLEPVALDQFGLFAGLGIYV
LVLSFFIPLILMQWGFKTADIESWAYQVLTEIRIGTITISLVGILAGVLLFALGFLVTRW
VQRWIDGNVMARSRVDAGVRNSIRTGIGYMGVGIAGLIGLSAAGIDLSSLALVAGALSLG
VGFGLQNIVSNFVSGLILLVERPFKVGDWIVSGTTEGFVRRISVRATEIETFQHQSIMMP
NSLLINASVGNWTHRNKLGRSEIAVTVTYASDPRRVIELLYEIAAAHPMILKNPAPNVGF
TAFEDERMTFELRIYVADVLTAGGVRNDLRVSIYERFRDEGIGAPFPMKIEDVTPEEEAG
SAGPEPSVMEKEKA